RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 APOBEC3AP31941 199 aaPredicted RBP11.49□□□□□ -0.57
RTN3-213ENST00000543552 FOXG1P55316 489 aaPredicted RBP11.49□□□□□ -0.57
RTN3-213ENST00000543552 IRX1P78414 480 aaPredicted RBP11.49□□□□□ -0.57
RTN3-213ENST00000543552 BNIP2Q12982 314 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 RGNQ15493 299 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 ELOA3BQ3SY89 546 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 MAVSQ7Z434 540 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 SERPINA11Q86U17 422 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 CLIP4Q8N3C7 705 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 ZIC4Q8N9L1 334 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 ELOA3Q8NG57 546 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 OR9I1Q8NGQ6 314 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 MFSD8Q8NHS3 518 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 GTF2H4Q92759 462 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 C3orf49Q96BT1 292 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 C7orf26Q96N11 449 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 ZNF385AQ96PM9 386 aaKnown RBP11.49□□□□□ -0.57
RTN3-213ENST00000543552 SPATA5L1Q9BVQ7 753 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 C1QTNF6Q9BXI9 259 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 C12orf10Q9HB07 376 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 TMBIM4Q9HC24 238 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 TCF7L2Q9NQB0 619 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 CORO2BQ9UQ03 480 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 PCDHB14Q9Y5E9 798 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 FKBP7Q9Y680 259 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 USH1CQ9Y6N9 552 aa11.49□□□□□ -0.57
RTN3-213ENST00000543552 KIAA1324LA8MWY0 1029 aaPredicted RBP11.48□□□□□ -0.57
RTN3-213ENST00000543552 AKAP8O43823 692 aaKnown RBP11.48□□□□□ -0.57
RTN3-213ENST00000543552 NPIPB7O75200 414 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 CRYAAP02489 173 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 PNMTP11086 282 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 PRG2P13727 222 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 PTNP21246 168 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 PRKAR1BP31321 381 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 MRPL19P49406 292 aaKnown RBP11.48□□□□□ -0.57
RTN3-213ENST00000543552 NCALDP61601 193 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 SNRPD2P62316 118 aaKnown RBP11.48□□□□□ -0.57
RTN3-213ENST00000543552 SLC25A3Q00325 362 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 GTDC1Q4AE62 458 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 HIKESHIQ53FT3 197 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 GCNT6Q5T4J0 391 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 HMBOX1Q6NT76 420 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 SLC2A7Q6PXP3 512 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 EPGNQ6UW88 154 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 B3GLCTQ6Y288 498 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 CREB3L2Q70SY1 520 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 ANKK1Q8NFD2 765 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 OR10H5Q8NGA6 315 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 LRRC8CQ8TDW0 803 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 FAM168AQ92567 244 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 KATNB1Q9BVA0 655 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 PAIP1Q9H074 479 aaKnown RBP11.48□□□□□ -0.57
RTN3-213ENST00000543552 YAE1D1Q9NRH1 226 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 SELENONQ9NZV5 590 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 FBXO9Q9UK97 447 aaPredicted RBP11.48□□□□□ -0.57
RTN3-213ENST00000543552 RCE1Q9Y256 329 aa11.48□□□□□ -0.57
RTN3-213ENST00000543552 ABCA1O95477 2261 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 CHD3Q12873 2000 aaKnown RBP11.47□□□□□ -0.57
RTN3-213ENST00000543552 IGHV4-30-2A0A087WSY4 118 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 PRORSD1PA6NEY8 169 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 ATP6V1G2-DDX39BF2Z307 99 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 AIM2O14862 343 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 HOXB1P14653 301 aaPredicted RBP11.47□□□□□ -0.57
RTN3-213ENST00000543552 ZNF43P17038 809 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 SELENOPP49908 381 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 P2RY4P51582 365 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 EFNA4P52798 201 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 C1DQ13901 141 aaKnown RBP11.47□□□□□ -0.57
RTN3-213ENST00000543552 MFSD13AQ14CX5 517 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 C3orf36Q3SXR2 165 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 TBRG1Q3YBR2 411 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 NIPAL3Q6P499 406 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 C6orf89Q6UWU4 347 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 BHLHE22Q8NFJ8 381 aaPredicted RBP11.47□□□□□ -0.57
RTN3-213ENST00000543552 OR1K1Q8NGR3 316 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 MAGEE2Q8TD90 523 aaPredicted RBP11.47□□□□□ -0.57
RTN3-213ENST00000543552 DNAJA4Q8WW22 397 aaPredicted RBP11.47□□□□□ -0.57
RTN3-213ENST00000543552 SLC38A4Q969I6 547 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 MAL2Q969L2 176 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 SLC25A36Q96CQ1 311 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 ALKBH3Q96Q83 286 aaPredicted RBP11.47□□□□□ -0.57
RTN3-213ENST00000543552 SLC38A2Q96QD8 506 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 LINC00470Q9BZP3 86 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 SLC13A4Q9UKG4 626 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 MOKQ9UQ07 419 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 COL6A5A8TX70 2615 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 CR1P17927 2039 aa11.47□□□□□ -0.57
RTN3-213ENST00000543552 MXRA5Q9NR99 2828 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 ARPC4-TTLL3A0A0A6YYG9 625 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 A8MV72 311 aaPredicted RBP11.46□□□□□ -0.57
RTN3-213ENST00000543552 VSTM5A8MXK1 200 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 EVPLLA8MZ36 301 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 FTCDNL1E5RQL4 147 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 NR5A2O00482 541 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 SLC43A1O75387 559 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 LGI1O95970 557 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 ARAFP10398 606 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 RPS5P46782 204 aaKnown RBP11.46□□□□□ -0.57
RTN3-213ENST00000543552 LOXL1Q08397 574 aaPredicted RBP11.46□□□□□ -0.57
RTN3-213ENST00000543552 BEND6Q5SZJ8 279 aaPredicted RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms