RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 BNIP2Q12982 314 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 MAD2L1Q13257 205 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 MRPL2Q5T653 305 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 TMEM225Q6GV28 225 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 SPATA21Q7Z572 469 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 EPHX4Q8IUS5 362 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 UBLCP1Q8WVY7 318 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 RHOXF2Q9BQY4 288 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 PPCSQ9HAB8 311 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 ADPRHL2Q9NX46 363 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 MARCOQ9UEW3 520 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 PCDHB14Q9Y5E9 798 aa15.39■□□□□ 0.05
CLSTN3-214ENST00000542663 IGHV2OR16-5A0A0B4J2B6 119 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 CFAP73A6NFT4 308 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 FRS3O43559 492 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 ERCC1P07992 297 aaPredicted RBP15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 ADRA2AP08913 450 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 HPCAP84074 193 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 CASP8Q14790 479 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 NIPAL3Q6P499 406 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 UGT2A3Q6UWM9 527 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 CKAP2Q8WWK9 683 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 TRNT1Q96Q11 434 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 SLC35A5Q9BS91 424 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 LINC00470Q9BZP3 86 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 MGAM2Q2M2H8 2515 aa15.38■□□□□ 0.05
CLSTN3-214ENST00000542663 TMEM229AB2RXF0 380 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 B4DSR2 109 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 GKN3PP0CG01 181 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 CBR1P16152 277 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 CXCR1P25024 350 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 SERPINB5P36952 375 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 ROR2Q01974 943 aaKnown RBP15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 MSMPQ1L6U9 139 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 SMU1Q2TAY7 513 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 GLCCI1Q86VQ1 547 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 CARM1Q86X55 608 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 RNF130Q86XS8 419 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 ANKRD27Q96NW4 1050 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 TPK1Q9H3S4 243 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 DYNLRB1Q9NP97 96 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 RLIMQ9NVW2 624 aa15.37■□□□□ 0.05
CLSTN3-214ENST00000542663 TMEM89A2RUT3 159 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 OR6C65A6NJZ3 312 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 FAM157AC9JC47 383 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 RPL36A-HNRNPH2H7BZ11 118 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 RGS9O75916 674 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ZNF432O94892 652 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 VAMP5O95183 116 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 HOXB1P14653 301 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 IL7RP16871 459 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 PCMT1P22061 227 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 CHI3L1P36222 383 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ACAA2P42765 397 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 SH3BGRP55822 239 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ACTG1P63261 375 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ARF1P84077 181 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 IL1RL1Q01638 556 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 GSTA3Q16772 222 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 SPANXN4Q5MJ08 99 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ELFN2Q5R3F8 820 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ANXA8L1Q5VT79 327 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 LRRC74BQ6ZQY2 392 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 CLDND2Q8NHS1 167 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 TESCQ96BS2 214 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ZMYND19Q96E35 227 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 ZNF837Q96EG3 531 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 PPP1R36Q96LQ0 422 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 TAPBPLQ9BX59 468 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 DPY30Q9C005 99 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 AKTIPQ9H8T0 292 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 MTHFD2LQ9H903 347 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 MOV10Q9HCE1 1003 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 SPEF1Q9Y4P9 236 aa15.36■□□□□ 0.05
CLSTN3-214ENST00000542663 A8MVM7 634 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 WNT9BO14905 357 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 NPIPB7O75200 414 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 SPAG7O75391 227 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 UQCRBP14927 111 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 POU3F1Q03052 451 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 SNTB2Q13425 540 aaKnown RBP15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 MAPK11Q15759 364 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 C1orf140Q5VVS0 124 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 PRAMEF8Q5VWM4 474 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 PRAMEF7Q5VXH5 474 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 KDM8Q8N371 416 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 C3orf56Q8N813 242 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 SGMS2Q8NHU3 365 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 TCP10LQ8TDR4 215 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 TMEM186Q96B77 213 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 RACGAP1Q9H0H5 632 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 NOX3Q9HBY0 568 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 HIF1ANQ9NWT6 349 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 RASD1Q9Y272 281 aa15.35■□□□□ 0.05
CLSTN3-214ENST00000542663 CDHR4A6H8M9 788 aa15.34■□□□□ 0.05
CLSTN3-214ENST00000542663 VSTM5A8MXK1 200 aa15.34■□□□□ 0.05
CLSTN3-214ENST00000542663 FTCDNL1E5RQL4 147 aa15.34■□□□□ 0.05
CLSTN3-214ENST00000542663 DBIP07108 87 aaKnown RBP15.34■□□□□ 0.05
CLSTN3-214ENST00000542663 CLDN17P56750 224 aa15.34■□□□□ 0.05
CLSTN3-214ENST00000542663 NPRL3Q12980 569 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms