RNA–Protein interactions for RNA: ENST00000492170.1

MRPL55-231, Transcript of mitochondrial ribosomal protein L55, human

TSL 5

Gene MRPL55, Length 241 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-231	ENST00000492170	ZNF385A	Q96PM9	386 aa	Known RBP	13.42	□□□□□ -0.26
MRPL55-231	ENST00000492170	OBP2B	Q9NPH6	170 aa		13.42	□□□□□ -0.26
MRPL55-231	ENST00000492170	CDC42EP3	Q9UKI2	254 aa		13.42	□□□□□ -0.26
MRPL55-231	ENST00000492170	DSPP	Q9NZW4	1301 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	STAB1	Q9NY15	2570 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170		A8MVM7	634 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ATP6V1G2-DDX39B	F2Z307	99 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ANP32D	O95626	131 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	BCHE	P06276	602 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	CRAT	P43155	626 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ATP4B	P51164	291 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	EFNA4	P52798	201 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	DSTN	P60981	165 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	GUCY1A3	Q02108	690 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	LARS2	Q15031	903 aa	Known RBP	13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ZSWIM7	Q19AV6	140 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	RNF220	Q5VTB9	566 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	TMEM225	Q6GV28	225 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ZIC4	Q8N9L1	334 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	OR9I1	Q8NGQ6	314 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	KCNS3	Q9BQ31	491 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ARMC7	Q9H6L4	198 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	NPHS2	Q9NP85	383 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	TMEM45A	Q9NWC5	275 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ADPRHL2	Q9NX46	363 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	ZNF443	Q9Y2A4	671 aa	Predicted RBP	13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	FKBP7	Q9Y680	259 aa		13.41	□□□□□ -0.26
MRPL55-231	ENST00000492170	CUBN	O60494	3623 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170		A0A096LPI6	279 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	TMEM247	A6NEH6	219 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	OR6C65	A6NJZ3	312 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	ZNF587B	E7ETH6	402 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	DYNC1I1	O14576	645 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	FRS3	O43559	492 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	VAMP5	O95183	116 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	FAM157C	P0CG43	387 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	ETFA	P13804	333 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	NCF2	P19878	526 aa	Predicted RBP	13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	MDH1	P40925	334 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	ACAA2	P42765	397 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	POLR2J	P52435	117 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	STX1B	P61266	288 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	BNIP2	Q12982	314 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	MAPK11	Q15759	364 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	HIKESHI	Q53FT3	197 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	CGB2	Q6NT52	195 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	C10orf105	Q8TEF2	133 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	PROX1	Q92786	737 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	AURKB	Q96GD4	344 aa	Predicted RBP	13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	BOD1	Q96IK1	185 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	ZNF385D	Q9H6B1	395 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	RMND5A	Q9H871	391 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	THUMPD1	Q9NXG2	353 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	MOK	Q9UQ07	419 aa		13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	HEATR1	Q9H583	2144 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-231	ENST00000492170	ZCCHC18	P0CG32	403 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	PAX7	P23759	505 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	MVD	P53602	400 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	UBE2N	P61088	152 aa	Known RBP	13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	SNRPD2	P62316	118 aa	Known RBP	13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	TBRG1	Q3YBR2	411 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	C1orf140	Q5VVS0	124 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	PRAMEF8	Q5VWM4	474 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	PRAMEF7	Q5VXH5	474 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	CYB5R2	Q6BCY4	276 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	FUNDC1	Q8IVP5	155 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	OR1K1	Q8NGR3	316 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	SLC38A5	Q8WUX1	472 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	TMEM158	Q8WZ71	300 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	FBXO17	Q96EF6	278 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	THOC1	Q96FV9	657 aa	Known RBP	13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	TMEM19	Q96HH6	336 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	ITCH	Q96J02	903 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	ALKBH3	Q96Q83	286 aa	Predicted RBP	13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	SLC38A2	Q96QD8	506 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	KCNK17	Q96T54	332 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	TPT1P8	Q9HAU6	139 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	SLC52A3	Q9NQ40	469 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	SLC6A13	Q9NSD5	602 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	FGFR1OP2	Q9NVK5	253 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	TMEM160	Q9NX00	188 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	ZNF232	Q9UNY5	417 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	RASD1	Q9Y272	281 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170	IFT52	Q9Y366	437 aa		13.39	□□□□□ -0.27
MRPL55-231	ENST00000492170		A0A0G2JPF8	293 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	HNRNPCL2	B2RXH8	293 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	HNRNPCL3	B7ZW38	293 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	HNRNPCL1	O60812	293 aa	Known RBP	13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	AHSA1	O95433	338 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	LGI1	O95970	557 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	F12	P00748	615 aa	Predicted RBP	13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	TFPT	P0C1Z6	253 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	HNRNPCL4	P0DMR1	293 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	USF1	P22415	310 aa	Predicted RBP	13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	GTF2E2	P29084	291 aa	Known RBP	13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	SELENOP	P49908	381 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	PDLIM4	P50479	330 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	P2RY4	P51582	365 aa		13.38	□□□□□ -0.27
MRPL55-231	ENST00000492170	SQLE	Q14534	574 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms