RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CMTM4Q8IZR5 234 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 NPEPL1Q8NDH3 523 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 HSPA12BQ96MM6 686 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ZNF578Q96N58 590 aaPredicted RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 CLEC4MQ9H2X3 399 aaPredicted RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 NARFLQ9H6Q4 476 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CAPN10Q9HC96 672 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 Q9N2J8 555 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 NOX4Q9NPH5 578 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 NANSQ9NR45 359 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 EVA1BQ9NVM1 165 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 HRASLS2Q9NWW9 162 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CPNE7Q9UBL6 633 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CA5BQ9Y2D0 317 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 COL4A2P08572 1712 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 A0A0B4J203 849 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 IFITM5A6NNB3 132 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 H0Y8X5 98 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 OR7A10O76100 309 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 GLCEO94923 617 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 IGF2P01344 180 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 IFNA7P01567 189 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 IGKV1D-16P01601 117 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 TACSTD2P09758 323 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 RAB40ALP0C0E4 278 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 ANKRD34CP0C6C1 535 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 DNASE1P24855 282 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 VSX2P58304 361 aaPredicted RBP10.35□□□□□ -0.75
USP4-205ENST00000431357 ALG11Q2TAA5 492 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 ZC3H14Q6PJT7 736 aaKnown RBP10.35□□□□□ -0.75
USP4-205ENST00000431357 FIP1L1Q6UN15 594 aaKnown RBP10.35□□□□□ -0.75
USP4-205ENST00000431357 PARM1Q6UWI2 310 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 DGAT2L6Q6ZPD8 337 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 LINGO2Q7L985 606 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 SYT9Q86SS6 491 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 OOSP2Q86WS3 158 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 ZNF687Q8N1G0 1237 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 FAM71CQ8NEG0 241 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 OR11H4Q8NGC9 324 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 RAB40AQ8WXH6 277 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 RIT1Q92963 219 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 PMEPA1Q969W9 287 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 DACT3Q96B18 629 aaPredicted RBP10.35□□□□□ -0.75
USP4-205ENST00000431357 NXPE2Q96DL1 559 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 TOE1Q96GM8 510 aaKnown RBP10.35□□□□□ -0.75
USP4-205ENST00000431357 VSTM2LQ96N03 204 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 GPX7Q96SL4 187 aaPredicted RBP10.35□□□□□ -0.75
USP4-205ENST00000431357 TTTY10Q9BZA0 68 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 SPRTNQ9H040 489 aaPredicted RBP10.35□□□□□ -0.75
USP4-205ENST00000431357 C20orf85Q9H1P6 137 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 DLL4Q9NR61 685 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 KLHL9Q9P2J3 617 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 MKL2Q9ULH7 1088 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 AUP1Q9Y679 476 aa10.35□□□□□ -0.75
USP4-205ENST00000431357 KIR2DS5A0A0G2JLQ3 304 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 A0A0G2JNG1 304 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 ATP6V1G2-DDX39BF2Z307 99 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 KIR2DS3K7RE56 304 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 MAGEB4O15481 346 aaPredicted RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 RDH16O75452 317 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 SERPINI2O75830 405 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 KRT33AO76009 404 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 KLF8O95600 359 aaPredicted RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 TNFP01375 233 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 CALCBP10092 127 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 POU3F3P20264 500 aaPredicted RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 PSMB1P20618 241 aaKnown RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 C4BPBP20851 252 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 AKT2P31751 481 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 UQCRC1P31930 480 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 HAAOP46952 286 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 SKP1P63208 163 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 UBE2IP63279 158 aaKnown RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 KIR2DS5Q14953 304 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 PXDC1Q5TGL8 231 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 METTL11BQ5VVY1 283 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 FAM199XQ6PEV8 388 aaPredicted RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 FBXO46Q6PJ61 603 aaPredicted RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 PRSS45Q7RTY3 260 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 LINC00518Q8N0U6 118 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 OR6V1Q8N148 313 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 OR51L1Q8NGJ5 315 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 FGF14Q92915 247 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 S100A16Q96FQ6 103 aaKnown RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 RBM18Q96H35 190 aaKnown RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 NMNAT3Q96T66 252 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 PDCD1LG2Q9BQ51 273 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 ZNF436Q9C0F3 470 aaPredicted RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 SLITRK2Q9H156 845 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 HEXA-AS1Q9H8Q6 139 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 HRASLSQ9HDD0 168 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 SLC39A1Q9NY26 324 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 COPS3Q9UNS2 423 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 MOKQ9UQ07 419 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 MRPS33Q9Y291 106 aaKnown RBP10.34□□□□□ -0.75
USP4-205ENST00000431357 SLC6A5Q9Y345 797 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 V9GY05 133 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 SERINC4A6NH21 518 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 PIN1P1O15428 100 aa10.34□□□□□ -0.75
USP4-205ENST00000431357 SELENOFO60613 162 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms