RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CALCRP30988 508 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 RPS5P46782 204 aaKnown RBP10.08□□□□□ -0.8
USP4-204ENST00000416417 EFNA4P52798 201 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 CRISP3P54108 245 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 DSCR9P59020 149 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 COPZ1P61923 177 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 CHRNB3Q05901 458 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 LOXL1Q08397 574 aaPredicted RBP10.08□□□□□ -0.8
USP4-204ENST00000416417 GGTLC2Q14390 218 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 GSTA3Q16772 222 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 ELOA3BQ3SY89 546 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 C6orf10Q5SRN2 563 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 PRAMEF8Q5VWM4 474 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 PRAMEF7Q5VXH5 474 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 PODNL1Q6PEZ8 512 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 SLC2A7Q6PXP3 512 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 MYPOPQ86VE0 399 aaPredicted RBP10.08□□□□□ -0.8
USP4-204ENST00000416417 COMTD1Q86VU5 262 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 POMGNT2Q8NAT1 580 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 ELOA3Q8NG57 546 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 KTI12Q96EK9 354 aaPredicted RBP10.08□□□□□ -0.8
USP4-204ENST00000416417 SLC38A2Q96QD8 506 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 VRK1Q99986 396 aaPredicted RBP10.08□□□□□ -0.8
USP4-204ENST00000416417 SF3B5Q9BWJ5 86 aaKnown RBP10.08□□□□□ -0.8
USP4-204ENST00000416417 TMEM45AQ9NWC5 275 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 PMF1-BGLAPU3KQ54 211 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 SLC35F4A4IF30 521 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 TMEM229AB2RXF0 380 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 ZNF587BE7ETH6 402 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 PHF1O43189 567 aaPredicted RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 SEC14L2O76054 403 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 IFNA2P01563 188 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 CELA3BP08861 270 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 PNMTP11086 282 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 IDO1P14902 403 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 SLC25A16P16260 332 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 POLR2JP52435 117 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 CLDN17P56750 224 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 VLDLRP98155 873 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 LARS2Q15031 903 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 SWI5Q1ZZU3 235 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 ZNF311Q5JNZ3 666 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 KIRREL3Q8IZU9 778 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 GLB1L3Q8NCI6 653 aaPredicted RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 BCL2L2Q92843 193 aaPredicted RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 ZNF837Q96EG3 531 aaPredicted RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 ITCHQ96J02 903 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 MAELQ96JY0 434 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 PTDSS2Q9BVG9 487 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 SPATA9Q9BWV2 254 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 PAIP1Q9H074 479 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 NELFAQ9H3P2 528 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 CHODLQ9H9P2 273 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 RAB21Q9UL25 225 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 PCDHB14Q9Y5E9 798 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 ZNF503-AS2A6NEH8 195 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 FTCDNL1E5RQL4 147 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 UBDO15205 165 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 NPIPB7O75200 414 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 AHSA1O95433 338 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 F12P00748 615 aaPredicted RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 CECR9P0C854 216 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 USF1P22415 310 aaPredicted RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 UBE2NP61088 152 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 MAGOHP61326 146 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 LSM11P83369 360 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP4-204ENST00000416417 TXNL4AP83876 142 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 ARF1P84077 181 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 ROR2Q01974 943 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 EGR4Q05215 589 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 LRRC74AQ0VAA2 488 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 RGNQ15493 299 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 RNF220Q5VTB9 566 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 CYB5R2Q6BCY4 276 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 SLC46A3Q7Z3Q1 461 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 ZCCHC24Q8N2G6 241 aaKnown RBP10.07□□□□□ -0.8
USP4-204ENST00000416417 C10orf111Q8N326 155 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 FOXN4Q96NZ1 517 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 KCNS3Q9BQ31 491 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 BEX2Q9BXY8 128 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 CALML5Q9NZT1 146 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 ZNF232Q9UNY5 417 aa10.07□□□□□ -0.8
USP4-204ENST00000416417 IGHV4-61A0A0C4DH41 118 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 A0A0G2JPF8 293 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 HNRNPCL2B2RXH8 293 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 HNRNPCL3B7ZW38 293 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 HNRNPCL1O60812 293 aaKnown RBP10.06□□□□□ -0.8
USP4-204ENST00000416417 OR4A8P0C604 315 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 ZCCHC18P0CG32 403 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 FAM157CP0CG43 387 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 HNRNPCL4P0DMR1 293 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 HTR2AP28223 471 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 SERPINF1P36955 418 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 PDLIM4P50479 330 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 MAP2K6P52564 334 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 IL1RL1Q01638 556 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 NAAAQ02083 359 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 ADIPOQQ15848 244 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 GLIPR1L2Q4G1C9 344 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 CARD17Q5XLA6 110 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms