RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TNFSF14O43557 240 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 FGF9P31371 208 aaPredicted RBP12.24□□□□□ -0.45
VPS54-203ENST00000409558 PITPNBP48739 271 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 YPEL5P62699 121 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ASAH1Q13510 395 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 HSD17B12Q53GQ0 312 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 TSSK4Q6SA08 328 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ATOH1Q92858 354 aaPredicted RBP12.24□□□□□ -0.45
VPS54-203ENST00000409558 VSTM2LQ96N03 204 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 TMEM43Q9BTV4 400 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 PCOLCE2Q9UKZ9 415 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 SCML1Q9UN30 329 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 PRAMEF2O60811 474 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ICOSLGO75144 302 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 S1PR1P21453 382 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ALG10Q5BKT4 473 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 NANOGNBQ7Z5D8 188 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 SIAH3Q8IW03 269 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ALG12Q9BV10 488 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 MED28Q9H204 178 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 OR10A4Q9H209 315 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ZMAT3Q9HA38 289 aaKnown RBP12.24□□□□□ -0.45
VPS54-203ENST00000409558 TMEM5Q9Y2B1 443 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 HMX3A6NHT5 357 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 PRR32B1ATL7 298 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 H0YC42 278 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ORC5O43913 435 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 HIST1H2ABP04908 130 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 SPI1P17947 270 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 POU3F3P20264 500 aaPredicted RBP12.24□□□□□ -0.45
VPS54-203ENST00000409558 IL12BP29460 328 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 SIRPAP78324 504 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 RAB30Q15771 203 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ETFDHQ16134 617 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ARHGAP11AQ6P4F7 1023 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 LYPD8Q6UX82 237 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 HIST3H2AQ7L7L0 130 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ZNF676Q8N7Q3 588 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 HIST1H2ACQ93077 130 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 ANKRD19PQ9H560 264 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 TRAPPC4Q9Y296 219 aa12.24□□□□□ -0.45
VPS54-203ENST00000409558 A0A1W2PPC4 97 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 BLKP51451 505 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 HBMQ6B0K9 141 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 TMPRSS11FQ6ZWK6 438 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 TMPRSS9Q7Z410 1059 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 MDGA2Q7Z553 956 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 TMPRSS12Q86WS5 348 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 PM20D2Q8IYS1 436 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 BMPERQ8N8U9 685 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 OR51A4Q8NGJ6 313 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 WDFY2Q96P53 400 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 STACQ99469 402 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 GRHPRQ9UBQ7 328 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 KLK11Q9UBX7 282 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 KLHDC2Q9Y2U9 406 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 NOX1Q9Y5S8 564 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 FREM3P0C091 2139 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 PCNX3Q9H6A9 2034 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 CTNSO60931 367 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 KHDRBS3O75525 346 aaKnown RBP12.23□□□□□ -0.45
VPS54-203ENST00000409558 LYPD3O95274 346 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 CD38P28907 300 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 CCINQ13939 588 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 ARHGAP40Q5TG30 622 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 LRRN1Q6UXK5 716 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 OR8S1Q8NH09 359 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 C3orf49Q96BT1 292 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 CACNG6Q9BXT2 260 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 TBL1XR1Q9BZK7 514 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 NCDNQ9UBB6 729 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 LOC100509620A0A075B734 347 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 H3BML4 177 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 MEN1O00255 615 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 CSN2P05814 226 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 MAGEA8P43361 318 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 NANOS3P60323 173 aaKnown RBP12.23□□□□□ -0.45
VPS54-203ENST00000409558 SLC25A30Q5SVS4 291 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 ZNF613Q6PF04 617 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 CHRDL2Q6WN34 429 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 OR8H1Q8NGG4 311 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 C1orf216Q8TAB5 229 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 SETD6Q8TBK2 473 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 A0A087WV62 115 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 GATBO75879 557 aaKnown RBP12.23□□□□□ -0.45
VPS54-203ENST00000409558 OR6A2O95222 327 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 DDOSTP39656 456 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 HTR2BP41595 481 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 ZNF550Q7Z398 422 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 NUDT22Q9BRQ3 303 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 MED17Q9NVC6 651 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 COQ3Q9NZJ6 369 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 RCE1Q9Y256 329 aa12.23□□□□□ -0.45
VPS54-203ENST00000409558 H0YIG0 161 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 TEX46H3BTG2 121 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 FABP7O15540 132 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 PTP4A3O75365 173 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 SLC25A12O75746 678 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 POU2F2P09086 479 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 SPARCP09486 303 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms