RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 OR12D1P0DN82 309 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 APEX1P27695 318 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RBMS1P29558 406 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FOXL2P58012 376 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ERVFC1P60507 584 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 DRAM2Q6UX65 266 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CHST6Q9GZX3 395 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TAS2R5Q9NYW4 299 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 A0A0J9YYE9 177 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 C11orf98E9PRG8 122 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF670-ZNF695F2Z2N8 137 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TRBC1P01850 177 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MMP7P09237 267 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CHRNB4P30926 498 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CXXC5Q7LFL8 322 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ADGRG5Q8IZF4 528 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CHDHQ8NE62 594 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR13G1Q8NGZ3 307 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF20P17024 532 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF25P17030 456 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GPX2P18283 190 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ST8SIA6P61647 398 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ACY1Q03154 408 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR51A7Q8NH64 312 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TEX37Q96LM6 180 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MGLLQ99685 303 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RDH14Q9HBH5 336 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TREM2Q9NZC2 230 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SLC17A3O00476 420 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ALDH1A1P00352 501 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PTGER3P43115 390 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MNX1P50219 401 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GPR19Q15760 415 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CHRDL2Q6WN34 429 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CEP68Q76N32 757 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR2T12Q8NG77 320 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SMPDL3AQ92484 453 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ATOH1Q92858 354 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 DZANK1Q9NVP4 752 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CDH10Q9Y6N8 788 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 NAV3Q8IVL0 2385 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TNRC6BQ9UPQ9 1833 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ANXA7P20073 488 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PRAMEF17Q5VTA0 474 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 NRSN1Q8IZ57 195 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR10G6Q8NH81 332 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF514Q96K75 400 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GPER1Q99527 375 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CTDSPLO15194 276 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 C22orf31O95567 290 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF8P17098 575 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MAPK14Q16539 360 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PABPC1L2AQ5JQF8 200 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR10K2Q6IF99 312 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TAS1R1Q7RTX1 841 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PXKQ7Z7A4 578 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 C16orf58Q96GQ5 468 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CPPED1Q9BRF8 314 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF426Q9BUY5 554 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 THSD1Q9NS62 852 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CCND3P30281 292 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 AHRP35869 848 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ACTC1P68032 377 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ACTA1P68133 377 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ABHD12BQ7Z5M8 362 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 LINC00116Q8NCU8 138 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SNX33Q8WV41 574 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 EDEM2Q9BV94 578 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 VCX2Q9H322 139 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR10H3O60404 316 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PRAMEF1O95521 474 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SLC19A1P41440 591 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 LHX1P48742 406 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MMP15P51511 669 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PLA1AQ53H76 456 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FAM162BQ5T6X4 162 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FAAP20Q6NZ36 180 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM81Q6P7N7 255 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MARC2Q969Z3 335 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 AMDHD1Q96NU7 426 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ACSS1Q9NUB1 689 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ESR1P03372 595 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 NR2F1P10589 423 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 OR13C3Q8NGS6 347 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CACNG6Q9BXT2 260 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TBC1D29Q9UFV1 150 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GSTZ1O43708 216 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 AK4P27144 223 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PTTG1IPP53801 180 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SPINK9Q5DT21 86 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TOMM20LQ6UXN7 152 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 MAMDC2Q7Z304 686 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TCEANCQ8N8B7 351 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 YIPF6Q96EC8 236 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RNF121Q9H920 327 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GRIFINA4D1Z8 144 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GLP2RO95838 553 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ARSIQ5FYB1 569 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GPAT4Q86UL3 456 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms