RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MEF2AQ02078 507 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 GPR17Q13304 367 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 UBXN2BQ14CS0 331 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 SLC22A24Q8N4F4 322 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 OR1J1Q8NGS3 322 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 NENFQ9UMX5 172 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 CCR7P32248 378 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 SOX18P35713 384 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 PRRT3Q5FWE3 981 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 OR9K2Q8NGE7 335 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 INPP5KQ9BT40 448 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ADAM29Q9UKF5 820 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ENTPD2Q9Y5L3 495 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 A0A0G2JLL6 359 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 TMEM235A6NFC5 223 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 UNCXA6NJT0 531 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 USP2O75604 605 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 LCATP04180 440 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ACVRL1P37023 503 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 RABGGTBP53611 331 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 GGTA1PQ4G0N0 100 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 IL34Q6ZMJ4 242 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 TMUB2Q71RG4 321 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 PRRT2Q7Z6L0 340 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ST8SIA4Q92187 359 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 DPF1Q92782 380 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 IRF7Q92985 503 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 C12orf42Q96LP6 360 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 LHX6Q9UPM6 363 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 H2AFB1P0C5Y9 115 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 NDUFA6P56556 154 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 GLIS1Q8NBF1 620 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 ELF4Q99607 663 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-201ENST00000328333 DPH1Q9BZG8 443 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 INIPQ9NRY2 104 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 OSGIN1Q9UJX0 560 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 GPR45Q9Y5Y3 372 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 IGFBP4P22692 258 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 SLC22A12Q96S37 553 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 HAO2Q9NYQ3 351 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 PCDHGA6Q9Y5G7 932 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 TMEM183BQ1AE95 376 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 OPN5Q6U736 354 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 OR8U1Q8NH10 309 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 KHSRPQ92945 711 aaKnown RBP eCLIP13.34□□□□□ -0.27
COL7A1-201ENST00000328333 TSLPQ969D9 159 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 hCG_1809904A0A1W2PP81 198 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 A0A1W2PPE2 198 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 A0A1W2PR64 198 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 A0A1W2PRV1 198 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 ADM5C9JUS6 153 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 NRP1O14786 923 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 CSF3P09919 207 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 TGM1P22735 817 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 RAB7AP51149 207 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 LYSMD2Q8IV50 215 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 ZMYND19Q96E35 227 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-201ENST00000328333 KLRG1Q96E93 195 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 SLC25A18Q9H1K4 315 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 RAB22AQ9UL26 194 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-201ENST00000328333 GABRR1P24046 479 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 ILKQ13418 452 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 CYB5D2Q8WUJ1 264 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 PCED1AQ9H1Q7 454 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 IL3RAP26951 378 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 BAMBIQ13145 260 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 PTRH1Q86Y79 214 aaKnown RBP13.34□□□□□ -0.27
COL7A1-201ENST00000328333 SLC41A2Q96JW4 573 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 DCLRE1CQ96SD1 692 aaKnown RBP13.34□□□□□ -0.27
COL7A1-201ENST00000328333 NECAP2Q9NVZ3 263 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 H7BYZ3 331 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 B4GAT1O43505 415 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 PTAFRP25105 342 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 SUMF1Q8NBK3 374 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 OR1J2Q8NGS2 313 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 UBXN10Q96LJ8 280 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 DNAJB11Q9UBS4 358 aa13.34□□□□□ -0.27
COL7A1-201ENST00000328333 MCTS1Q9ULC4 181 aaKnown RBP13.34□□□□□ -0.27
COL7A1-201ENST00000328333 VAMP3Q15836 100 aa13.33□□□□□ -0.27
COL7A1-201ENST00000328333 NXNL2Q5VZ03 156 aa13.33□□□□□ -0.27
COL7A1-201ENST00000328333 PLCXD3Q63HM9 321 aa13.33□□□□□ -0.27
COL7A1-201ENST00000328333 DMRT3Q9NQL9 472 aa13.33□□□□□ -0.27
COL7A1-201ENST00000328333 OXA1LQ15070 435 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 MKXQ8IYA7 352 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 OR7D2Q96RA2 312 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 OR51I2Q9H344 312 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 ZMAT5Q9UDW3 170 aaKnown RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 CBY3A6NI87 242 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 HSPB2A8KAH6 182 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 TRIM77I1YAP6 450 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 HLA-FP30511 346 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 GCH1P30793 250 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 SIRPAP78324 504 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 GPR18Q14330 331 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 STK11Q15831 433 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 HSPB2Q16082 182 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 OR52N1Q8NH53 320 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 OR4A16Q8NH70 328 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 DIMT1Q9UNQ2 313 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms