RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 AKTIPQ9H8T0 292 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 BTNL2Q9UIR0 455 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 METRNQ9UJH8 293 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 PRAMEF27A3QJZ7 478 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 E9PBE3 544 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 LILRA1O75019 489 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 SPAG7O75391 227 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 BPGMP07738 259 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 MYZAPP0CAP1 466 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 NR2F1P10589 423 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 CBR1P16152 277 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 S100A3P33764 101 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 DVL1P1P54792 670 aaPredicted RBP12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 CDH15P55291 814 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 POU3F1Q03052 451 aaPredicted RBP12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 PDCD2Q16342 344 aaPredicted RBP12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 SYPL1Q16563 259 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 PRAMEF8Q5VWM4 474 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 PRAMEF7Q5VXH5 474 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 WBP2NLQ6ICG8 309 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 NIPAL3Q6P499 406 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 CREB3L2Q70SY1 520 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 HMGN2P46Q86SG4 172 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 RNF130Q86XS8 419 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 ANKFN1Q8N957 763 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 UBASH3BQ8TF42 649 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 C1orf159Q96HA4 380 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 ALKBH3Q96Q83 286 aaPredicted RBP12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 SNX18Q96RF0 628 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 DOK1Q99704 481 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 DYNLRB1Q9NP97 96 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 ADPRHL2Q9NX46 363 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 LGALS13Q9UHV8 139 aa12.81□□□□□ -0.36
CCDC88B-201ENST00000301897 B4DSR2 109 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 RPL36A-HNRNPH2H7BZ11 118 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 CHRM4P08173 479 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 TFPTP0C1Z6 253 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 IFNGR1P15260 489 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 CALCRP30988 508 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 ARR3P36575 388 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 SELENOPP49908 381 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 P2RY4P51582 365 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 ROR2Q01974 943 aaKnown RBP12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 RIN1Q13671 783 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 LIN52Q52LA3 116 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 SPANXN4Q5MJ08 99 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 C1orf140Q5VVS0 124 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 DEF8Q6ZN54 512 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 SPATA21Q7Z572 469 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 NUDCD3Q8IVD9 361 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 STK35Q8TDR2 534 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 ZMYND19Q96E35 227 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 ARMC7Q9H6L4 198 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 CALML5Q9NZT1 146 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 RCE1Q9Y256 329 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 DYSFO75923 2080 aa12.8□□□□□ -0.36
CCDC88B-201ENST00000301897 A0A096LPE4 126 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 IGHV2OR16-5A0A0B4J2B6 119 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 A0A1W2PPZ6 126 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 CDHR4A6H8M9 788 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 CCDC154A6NI56 674 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 NR5A2O00482 541 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 FRS3O43559 492 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 CFPP27918 469 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 THBS4P35443 961 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 EVX1P49640 407 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 HGFACQ04756 655 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 ADRM1Q16186 407 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 FAM174BQ3ZCQ3 159 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 REP15Q6BDI9 236 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 GLCCI1Q86VQ1 547 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 SVOPLQ8N434 492 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 TEX29Q8N6K0 151 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 CKAP2Q8WWK9 683 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 PANX1Q96RD7 426 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 CACYBPQ9HB71 228 aaKnown RBP12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 CMAHPQ9Y471 501 aa12.79□□□□□ -0.36
CCDC88B-201ENST00000301897 SPRY1O43609 319 aaPredicted RBP12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 SLC43A1O75387 559 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 AHSA1O95433 338 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 KRT75O95678 551 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 SERPINE1P05121 402 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 ZNF43P17038 809 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 LBPP18428 481 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 NCF2P19878 526 aaPredicted RBP12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 GTF2E2P29084 291 aaKnown RBP12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 IL2RGP31785 369 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 ACAA2P42765 397 aaKnown RBP12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 ETV4P43268 484 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 TUBA1BP68363 451 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 TUBA4AP68366 448 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 LGALS3BPQ08380 585 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 IFFO1Q0D2I5 559 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 DAG1Q14118 895 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 LARS2Q15031 903 aaKnown RBP12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 TUBA1AQ71U36 451 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 EPHX4Q8IUS5 362 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 CADM2Q8N3J6 435 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 MFSD8Q8NHS3 518 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms