RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PPP1R3EQ9H7J1 279 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ZNF442Q9H7R0 627 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SLC35D1Q9NTN3 355 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SPHK1Q9NYA1 384 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SLC6A5Q9Y345 797 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 HEBP2Q9Y5Z4 205 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 MYH9P35579 1960 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 ACOT7O00154 380 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 OR2J3O76001 311 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 VIPP01282 170 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SLC35G4P0C7Q5 338 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ZNF25P17030 456 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 PSMB1P20618 241 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 HTR1FP30939 366 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ACVRL1P37023 503 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 PBX2P40425 430 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 GPR85P60893 370 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 POU6F2P78424 691 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 CYCSP99999 105 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 MAT1AQ00266 395 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 SORDQ00796 357 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 DECR1Q16698 335 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 C18orf63Q68DL7 685 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 OVCH2Q7RTZ1 564 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 OR4N5Q8IXE1 308 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 FAM86B1Q8N7N1 296 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 RELL2Q8NC24 303 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 PXT1Q8NFP0 134 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ST6GALNAC5Q9BVH7 336 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 TRMT61BQ9BVS5 477 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 C1QTNF7Q9BXJ2 289 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 KLHL9Q9P2J3 617 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 PTGDR2Q9Y5Y4 395 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 NPTNQ9Y639 398 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ZFP37Q9Y6Q3 630 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 C1orf226A1L170 272 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 VEGFDO43915 354 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SERPINA2P20848 420 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 CORO1AP31146 461 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 FAM189BP81408 668 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SLAMF1Q13291 335 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 MRPL58Q14197 206 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 HMGN3Q15651 99 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 PRSS42Q7Z5A4 293 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ABHD12BQ7Z5M8 362 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 UCN3Q969E3 161 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ELP4Q96EB1 424 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 LRR1Q96L50 414 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SPAG8Q99932 426 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 VAMP8Q9BV40 100 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ZFP57Q9NU63 452 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 KLHL13Q9P2N7 655 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 AUP1Q9Y679 476 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ANKRD31Q8N7Z5 1873 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 KDM4EB2RXH2 506 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 LY86O95711 162 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 GUSBP08236 651 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 NDUFV2P19404 249 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 RFX2P48378 723 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 CEBPDP49716 269 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 UBE2G2P60604 165 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 DHODHQ02127 395 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 PRSS58Q8IYP2 241 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 OR13C9Q8NGT0 318 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SCAMP5Q8TAC9 235 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 WDR20Q8TBZ3 569 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 THAP7Q9BT49 309 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 NDRG3Q9UGV2 375 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 GPR34Q9UPC5 381 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 PCDHGC4Q9Y5F7 938 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 TMEM14AQ9Y6G1 99 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 LOC102723532A0A0G2JNH3 316 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 CRXO43186 299 aaPredicted RBP5.96□□□□□ -1.45
VPS35-201ENST00000299138 PRNPP04156 253 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 APEHP13798 732 aaKnown RBP5.96□□□□□ -1.45
VPS35-201ENST00000299138 ZNF44P15621 663 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 HMGA1P17096 107 aaKnown RBP5.96□□□□□ -1.45
VPS35-201ENST00000299138 SOX9P48436 509 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 CDC34P49427 236 aaPredicted RBP5.96□□□□□ -1.45
VPS35-201ENST00000299138 RIDAP52758 137 aaKnown RBP5.96□□□□□ -1.45
VPS35-201ENST00000299138 PCK2Q16822 640 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 MAMDC2Q7Z304 686 aaPredicted RBP5.96□□□□□ -1.45
VPS35-201ENST00000299138 C1orf87Q8N0U7 546 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 OR13C2Q8NGS9 318 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 OR14L1PQ8NHC6 308 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 SGK3Q96BR1 496 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 ZNF689Q96CS4 500 aaPredicted RBP5.96□□□□□ -1.45
VPS35-201ENST00000299138 RTP3Q9BQQ7 232 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 SLC17A5Q9NRA2 495 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 FBXL2Q9UKC9 423 aa5.96□□□□□ -1.45
VPS35-201ENST00000299138 C2orf72A6NCS6 295 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 OR1F1O43749 312 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 MT-ND4P03905 459 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 S100A8P05109 93 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 BCHEP06276 602 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 OR10J4P0C629 311 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 S100A7P31151 101 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CRYBB2P43320 205 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 MMP15P51511 669 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms