RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 MNDAP41218 407 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 GPR4P46093 362 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 PTH2RP49190 550 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 VASPP50552 380 aaPredicted RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 FABP9Q0Z7S8 132 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 RPE65Q16518 533 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 PIP5KL1Q5T9C9 394 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 DMKNQ6E0U4 476 aaPredicted RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 LRRTM4Q86VH4 590 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 STX12Q86Y82 276 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 C1orf216Q8TAB5 229 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 EXOSC8Q96B26 276 aaKnown RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 DTD2Q96FN9 168 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 ARHGDIGQ99819 225 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 KRCC1Q9NPI7 259 aaPredicted RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 INPP5EQ9NRR6 644 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 LRRC72A6NJI9 287 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 RPN2P04844 631 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 KLK3P07288 261 aaPredicted RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 RD3LP0DJH9 198 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 ZNF3P17036 446 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 NT5EP21589 574 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 OR12D2P58182 307 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 ACTR1AP61163 376 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 MRPS10P82664 201 aaKnown RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 SRSF3P84103 164 aaKnown RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 REEP5Q00765 189 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 CBFBQ13951 182 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 TMEM69Q5SWH9 247 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 GAREM2Q75VX8 874 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 OVCH1Q7RTY7 1134 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 TRAPPC5Q8IUR0 188 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 DCUN1D3Q8IWE4 304 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 MRPL43Q8N983 215 aaKnown RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 SPPL3Q8TCT6 385 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 SLC25A38Q96DW6 304 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 MTIF3Q9H2K0 278 aaKnown RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 TCF7L1Q9HCS4 588 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 TREM1Q9NP99 234 aa12.07□□□□□ -0.48
NUP54-201ENST00000264883 ZCCHC3Q9NUD5 404 aaKnown RBP12.07□□□□□ -0.48
NUP54-201ENST00000264883 MTCL1Q9Y4B5 1905 aaKnown RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 LINC01553A4QN01 128 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 CPSF4LA6NMK7 179 aaKnown RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 C2orf74A8MZ97 194 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ACOT7O00154 380 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ACTL6AO96019 429 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 MRPL3P09001 348 aaKnown RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 ERGP11308 486 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ABCD3P28288 659 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 PYCR1P32322 319 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 CTNNB1P35222 781 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ADH7P40394 386 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 PNLIPRP2P54317 469 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 DECR1Q16698 335 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 C9orf152Q5JTZ5 239 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ZNF697Q5TEC3 545 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ZNF620Q6ZNG0 422 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 FCRLAQ7L513 359 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 SZRD1Q7Z422 152 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 OR56A1Q8NGH5 318 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 OR2L2Q8NH16 312 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 OR5J2Q8NH18 312 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 FBXO17Q96EF6 278 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 S100A16Q96FQ6 103 aaKnown RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 SAMD8Q96LT4 415 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 VRK1Q99986 396 aaPredicted RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 SEC11CQ9BY50 192 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 SEMA4GQ9NTN9 838 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 METTL1Q9UBP6 276 aaKnown RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 DMRT1Q9Y5R6 373 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 CDHR4A6H8M9 788 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 POM121BA6NF01 834 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 HIDE1A8MVS5 230 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 C5orf67F2Z3F1 127 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 NDUFS4O43181 175 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 OR2F2O95006 317 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 PRG2P13727 222 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ZNF44P15621 663 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 FAUP35544 74 aaKnown RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 PPT1P50897 306 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 OR2F1Q13607 317 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 NDUFAF6Q330K2 333 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ASTLQ6HA08 431 aaPredicted RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 SPRED2Q7Z698 418 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 OR1J4Q8NGS1 313 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 ACOT11Q8WXI4 607 aaPredicted RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 ZDHHC12Q96GR4 267 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 AMDHD1Q96NU7 426 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 F2RL3Q96RI0 385 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 MNTQ99583 582 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 TRMT61BQ9BVS5 477 aaKnown RBP12.06□□□□□ -0.48
NUP54-201ENST00000264883 ZDHHC5Q9C0B5 715 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 UFSP2Q9NUQ7 469 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 FOXJ3Q9UPW0 622 aa12.06□□□□□ -0.48
NUP54-201ENST00000264883 TBX6O95947 436 aaPredicted RBP12.05□□□□□ -0.48
NUP54-201ENST00000264883 C8AP07357 584 aa12.05□□□□□ -0.48
NUP54-201ENST00000264883 NDUFV2P19404 249 aa12.05□□□□□ -0.48
NUP54-201ENST00000264883 SLC16A1P53985 500 aa12.05□□□□□ -0.48
NUP54-201ENST00000264883 DEFA6Q01524 100 aa12.05□□□□□ -0.48
NUP54-201ENST00000264883 ZNF345Q14585 488 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms