RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MMP21Q8N119 569 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 OR14A16Q8NHC5 309 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 RNF128Q8TEB7 428 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 TMEM255BQ8WV15 326 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 ZNF578Q96N58 590 aaPredicted RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 FOXN4Q96NZ1 517 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 NXF5Q9H1B4 397 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 NOX4Q9NPH5 578 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 SEMA4GQ9NTN9 838 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 POU2F3Q9UKI9 436 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 GOLGB1Q14789 3259 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 ZNF593O00488 134 aaPredicted RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 NUDT21O43809 227 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 PRKRAO75569 313 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 IGFBP6P24592 240 aaPredicted RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 CD6P30203 668 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 RPS19P39019 145 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 LUMP51884 338 aaPredicted RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 GPLD1P80108 840 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 MPEG1Q2M385 716 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 METRNLQ641Q3 311 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 DPY19L2P2Q6ZN68 376 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 FAM26EQ8N5C1 309 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 NANOGP1Q8N7R0 232 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 FAM174AQ8TBP5 190 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 PPA2Q9H2U2 334 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 ASB1Q9Y576 335 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 EVPLQ92817 2033 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 TSPAN11A1L157 253 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 AGPAT2O15120 278 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 FABP7O15540 132 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 SBK3P0C264 359 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 FOLR3P41439 243 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 TEKQ02763 1124 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 SYT14P1Q58G82 188 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 CST9Q5W186 159 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 SLC35D2Q76EJ3 337 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 ACBD4Q8NC06 268 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 OR5H6Q8NGV6 325 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 NAT6Q93015 286 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 TMEM68Q96MH6 324 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 HINT2Q9BX68 163 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 TSPAN10Q9H1Z9 355 aaPredicted RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 C1orf198Q9H425 327 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 TNFRSF12AQ9NP84 129 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 NME7Q9Y5B8 376 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 A0A0D9SG52 128 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 FAM230AA0A1W2PPH8 454 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 TMEM202A6NGA9 273 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 YY2O15391 372 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 LGI1O95970 557 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 PTBP1P26599 531 aaKnown RBP eCLIP9.97□□□□□ -0.813e-6■■■■■ 30.2
CD44-201ENST00000263398 HOXA9P31269 272 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 BCL6P41182 706 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 GP2P55259 537 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 FOXK1P85037 733 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 CTU2Q2VPK5 515 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 ZMAT1Q5H9K5 638 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 RFPL4BQ6ZWI9 263 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 ZNF454Q8N9F8 522 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 PPP1R35Q8TAP8 253 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 ULBP2Q9BZM5 246 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 WDR76Q9H967 626 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 NCDNQ9UBB6 729 aa9.97□□□□□ -0.81
CD44-201ENST00000263398 PTRH2Q9Y3E5 179 aaKnown RBP9.97□□□□□ -0.81
CD44-201ENST00000263398 ADAMTSL1Q8N6G6 1762 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 TNFRSF10AO00220 468 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 ADAM23O75077 832 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 RPS27AP62979 156 aaKnown RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 UBA52P62987 128 aaKnown RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 OPCMLQ14982 345 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 OXA1LQ15070 435 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 HYAL4Q2M3T9 481 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 PRICKLE2Q7Z3G6 844 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 LIX1LQ8IVB5 337 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 ZFAND1Q8TCF1 268 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 SENP5Q96HI0 755 aaPredicted RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 CDCA4Q9BXL8 241 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 GABARAPL1Q9H0R8 117 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 BIN3Q9NQY0 253 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 ASCC3Q8N3C0 2202 aaKnown RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 LRIT2A6NDA9 550 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 HCRTR1O43613 425 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 GABRR1P24046 479 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 HTR2CP28335 458 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 CLDN6P56747 220 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 EEF1A1P68104 462 aaKnown RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 MAT1AQ00266 395 aaKnown RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 MRPL58Q14197 206 aaKnown RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 GALEQ14376 348 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 MEX3BQ6ZN04 569 aaKnown RBP9.96□□□□□ -0.81
CD44-201ENST00000263398 IDO2Q6ZQW0 420 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 MKXQ8IYA7 352 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 OR1S1Q8NH92 325 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 MBOAT4Q96T53 435 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 ACKR4Q9NPB9 350 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 DUSP22Q9NRW4 184 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 LRFN1Q9P244 771 aa9.96□□□□□ -0.81
CD44-201ENST00000263398 CORINQ9Y5Q5 1042 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms