RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SLC6A7Q99884 636 aa8.74□□□□□ -1.01
TRIM28-210ENST00000597618 SLC52A3Q9NQ40 469 aa8.74□□□□□ -1.01
TRIM28-210ENST00000597618 EXOSC3Q9NQT5 275 aaKnown RBP8.74□□□□□ -1.01
TRIM28-210ENST00000597618 TREM2Q9NZC2 230 aa8.74□□□□□ -1.01
TRIM28-210ENST00000597618 TMED7Q9Y3B3 224 aa8.74□□□□□ -1.01
TRIM28-210ENST00000597618 A0A096LPE4 126 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 IGHV2OR16-5A0A0B4J2B6 119 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 A0A0G2JMP0 313 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 A0A0X1KG70 313 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 A0A1W2PPZ6 126 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 G3V2L1 256 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 NR5A2O00482 541 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 AZIN1O14977 448 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 PIP5K1BO14986 540 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 SYNGR3O43761 229 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 BCAS1O75363 584 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 ANPEPP15144 967 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 MAPK1P28482 360 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 SOAT1P35610 550 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 IDH2P48735 452 aaKnown RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 EVX1P49640 407 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 POLR2HP52434 150 aaKnown RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 TMEM33P57088 247 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 DNAJB13P59910 316 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 RPS26P62854 115 aaKnown RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 SNTB2Q13425 540 aaKnown RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 DAG1Q14118 895 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 MAPK14Q16539 360 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 GALNTL6Q49A17 601 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 C1orf229Q6ZS94 237 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 GPAT4Q86UL3 456 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 MYPOPQ86VE0 399 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 ARFGAP2Q8N6H7 521 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 ZDHHC22Q8N966 263 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 IL17RDQ8NFM7 739 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 OR4M2Q8NGB6 313 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 RDH5Q92781 318 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 PRPF18Q99633 342 aaKnown RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 MS4A5Q9H3V2 200 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 NTN4Q9HB63 628 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 ESM1Q9NQ30 184 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 G6PC2Q9NQR9 355 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 POLE3Q9NRF9 147 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 DDX28Q9NUL7 540 aaKnown RBP8.73□□□□□ -1.01
TRIM28-210ENST00000597618 EXD2Q9NVH0 621 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 REV1Q9UBZ9 1251 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 CMAHPQ9Y471 501 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 CMYA5Q8N3K9 4069 aa8.73□□□□□ -1.01
TRIM28-210ENST00000597618 TMEM72A0PK05 275 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 AQP7P3A6NL99 342 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 J3QLI3 93 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 CFLARO15519 480 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 AGR2O95994 175 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 GPIP06744 558 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 GUSBP08236 651 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 CELA3BP08861 270 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 LINC00032P0C843 101 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 CBR1P16152 277 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 MATN1P21941 496 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 ARR3P36575 388 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 SELENOPP49908 381 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 ETF1P62495 437 aaKnown RBP8.72□□□□□ -1.01
TRIM28-210ENST00000597618 MRPS11P82912 194 aaKnown RBP8.72□□□□□ -1.01
TRIM28-210ENST00000597618 MYBPC1Q00872 1141 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 ZNF311Q5JNZ3 666 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 ATAD3BQ5T9A4 648 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 AP1ARQ63HQ0 302 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 CARM1Q86X55 608 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 HOMEZQ8IX15 550 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 TMEM99Q8N816 258 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 NANPQ8TBE9 248 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 SLC35G5Q96KT7 338 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 FMO2Q99518 471 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 ZNF416Q9BWM5 594 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 NELFAQ9H3P2 528 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 TUBB1Q9H4B7 451 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 SERHL2Q9H4I8 314 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 NOX3Q9HBY0 568 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 ZNF275Q9NSD4 429 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-210ENST00000597618 DCDC2Q9UHG0 476 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 OSGIN1Q9UJX0 560 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 EMCNQ9ULC0 261 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 FIS1Q9Y3D6 152 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 WDR45Q9Y484 360 aa8.72□□□□□ -1.01
TRIM28-210ENST00000597618 ZC3H12DA2A288 527 aaKnown RBP8.71□□□□□ -1.02
TRIM28-210ENST00000597618 LIPT2A6NK58 231 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 WNT9BO14905 357 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 PPIHO43447 177 aaKnown RBP8.71□□□□□ -1.02
TRIM28-210ENST00000597618 GLRA3O75311 464 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 LYPLA1O75608 230 aaPredicted RBP8.71□□□□□ -1.02
TRIM28-210ENST00000597618 AKR7A3O95154 331 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 VAMP5O95183 116 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 AVPP01185 164 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 HPXP02790 462 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 GSNP06396 782 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 ARAFP10398 606 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 UQCRBP14927 111 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 FPR2P25090 351 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 GCAP28676 217 aa8.71□□□□□ -1.02
TRIM28-210ENST00000597618 TACR3P29371 465 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms