RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 A0A1B0GUH1 482 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 SH3PXD2BA1X283 911 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 MBD3L4A6NDZ8 208 aaPredicted RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 MBD3L3A6NE82 208 aaPredicted RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 MBD3L5A6NJ08 208 aaPredicted RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 ENTPD5O75356 428 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 BGLAPP02818 100 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 FPR1P21462 350 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 FASP25445 335 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 AGFG1P52594 562 aaKnown RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 CTBP2P56545 445 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 NUP107P57740 925 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 ZNF74Q16587 644 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 PPP4R4Q6NUP7 873 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 LSRQ86X29 649 aaPredicted RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 NRMQ8IXM6 262 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 C10orf53Q8N6V4 93 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 OR4K5Q8NGD3 323 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 MBD3L2Q8NHZ7 208 aaPredicted RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 FNDC9Q8TBE3 224 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 STMN2Q93045 179 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 DNAJA3Q96EY1 480 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 TM9SF2Q99805 663 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 NAA11Q9BSU3 229 aaPredicted RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 PRRG4Q9BZD6 226 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 FKRPQ9H9S5 495 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 MEMO1Q9Y316 297 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 ARHGAP21Q5T5U3 1957 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 CLOCKO15516 846 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 PRKCDQ05655 676 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 ATP6AP1Q15904 470 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 EXOC3L2Q2M3D2 409 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 TMEM211Q6ICI0 200 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 C3P1Q6ZMU1 363 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 FCRLAQ7L513 359 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 MAMDC2Q7Z304 686 aaPredicted RBP15.29■□□□□ 0.04
NUP88-210ENST00000574867 P4HA3Q7Z4N8 544 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 CDK20Q8IZL9 346 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 SCAIQ8N9R8 606 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 OR4C15Q8NGM1 316 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 PRR7Q8TB68 274 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 RNF128Q8TEB7 428 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 SLC25A36Q96CQ1 311 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 BPIFA2Q96DR5 249 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 SGTBQ96EQ0 304 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 TTYH2Q9BSA4 534 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 ASPNQ9BXN1 380 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 ZNF229Q9UJW7 825 aa15.29■□□□□ 0.04
NUP88-210ENST00000574867 SMAD9O15198 467 aaKnown RBP15.28■□□□□ 0.04
NUP88-210ENST00000574867 PIP5K1CO60331 668 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 LDLRP01130 860 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 IFI30P13284 250 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 TIMP3P35625 211 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 IFNGR2P38484 337 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 H3F3AP84243 136 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 ESPL1Q14674 2120 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 SEC23BQ15437 767 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 EIF2S3LQ2VIR3 472 aaKnown RBP15.28■□□□□ 0.04
NUP88-210ENST00000574867 SLC43A2Q8N370 569 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 ADPRHL1Q8NDY3 354 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 PIGXQ8TBF5 258 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 LIPHQ8WWY8 451 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 ZFP3Q96NJ6 502 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 MOGAT1Q96PD6 335 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 DMRTA2Q96SC8 542 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 NANSQ9NR45 359 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 C20orf141Q9NUB4 165 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 C6orf203Q9P0P8 240 aaPredicted RBP15.28■□□□□ 0.04
NUP88-210ENST00000574867 PHF3Q92576 2039 aaKnown RBP15.28■□□□□ 0.04
NUP88-210ENST00000574867 AQP7P3A6NL99 342 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 CH25HO95992 272 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 GRPRP30550 384 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 RNPS1Q15287 305 aaKnown RBP15.28■□□□□ 0.04
NUP88-210ENST00000574867 GTF2IRD2BQ6EKJ0 949 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 ABLIM2Q6H8Q1 611 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 OR2A2Q6IF42 318 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 MTFR2Q6P444 385 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 TBPL2Q6SJ96 375 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 GTF2IRD2Q86UP8 949 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 RNF122Q9H9V4 155 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 VNN3Q9NY84 501 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 B3GALT5Q9Y2C3 310 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 U3KQV3 271 aa15.28■□□□□ 0.04
NUP88-210ENST00000574867 H3BNX3 289 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 CCL21O00585 134 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 CYTIPO60759 359 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 E2F6O75461 281 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 OR7A10O76100 309 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 CCNB2O95067 398 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 TGM6O95932 706 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 DNAJA1P31689 397 aaKnown RBP15.27■□□□□ 0.03
NUP88-210ENST00000574867 C4orf17Q53FE4 359 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 OTUD3Q5T2D3 398 aaPredicted RBP15.27■□□□□ 0.03
NUP88-210ENST00000574867 SLC46A3Q7Z3Q1 461 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 BDH2Q9BUT1 245 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 GP6Q9HCN6 339 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 S100A14Q9HCY8 104 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 CHST11Q9NPF2 352 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 GLRX2Q9NS18 164 aa15.27■□□□□ 0.03
NUP88-210ENST00000574867 MRPL39Q9NYK5 338 aaKnown RBP15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms