RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TFPTP0C1Z6 253 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 GKN3PP0CG01 181 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 ZCCHC18P0CG32 403 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 IDO1P14902 403 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 VLDLRP98155 873 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 OR7A5Q15622 319 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 ZSWIM7Q19AV6 140 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 TMEM249Q2WGJ8 235 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 LIN52Q52LA3 116 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 PDCD4Q53EL6 469 aaKnown RBP14.97□□□□□ -0.01
CLN3-216ENST00000565316 RNF220Q5VTB9 566 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 HHATQ5VTY9 493 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 WBP2NLQ6ICG8 309 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 HMBOX1Q6NT76 420 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 ZNF836Q6ZNA1 936 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 AAED1Q7RTV5 226 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 CROCCP2Q86T23 111 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 VRK2Q86Y07 508 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 OR52P1PQ8NH57 321 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 MAELQ96JY0 434 aaKnown RBP14.97□□□□□ -0.01
CLN3-216ENST00000565316 ZNF385AQ96PM9 386 aaKnown RBP14.97□□□□□ -0.01
CLN3-216ENST00000565316 PAIP2Q9BPZ3 127 aaKnown RBP14.97□□□□□ -0.01
CLN3-216ENST00000565316 CALML5Q9NZT1 146 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 P2RX2Q9UBL9 471 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 ATP23Q9Y6H3 246 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 A8MVM7 634 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 NPIPB7O75200 414 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 SLC22A3O75751 556 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 WNT11O96014 354 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 ETFAP13804 333 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 SLC25A16P16260 332 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 APOBEC3AP31941 199 aaPredicted RBP14.96□□□□□ -0.01
CLN3-216ENST00000565316 EFNA4P52798 201 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 PRPS1P60891 318 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 CHRNB3Q05901 458 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 C6orf52Q5T4I8 152 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 PODNL1Q6PEZ8 512 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 MSANTD1Q6ZTZ1 278 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 ZNF525Q8N782 197 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 C10orf105Q8TEF2 133 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 SLC38A5Q8WUX1 472 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 HTRA1Q92743 480 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 OBP2BQ9NPH6 170 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 CHST2Q9Y4C5 530 aa14.96□□□□□ -0.01
CLN3-216ENST00000565316 ATP6V1G2-DDX39BF2Z307 99 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 SLCO1B7G3V0H7 640 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 VAMP5O95183 116 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 IFNA2P01563 188 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 BMP4P12644 408 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 CRISP3P54108 245 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 COPZ1P61923 177 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 SWI5Q1ZZU3 235 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 MST1LQ2TV78 715 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 CHRFAM7AQ494W8 412 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 ABHD12BQ7Z5M8 362 aaPredicted RBP14.95□□□□□ -0.02
CLN3-216ENST00000565316 CLIP4Q8N3C7 705 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 ANKRD42Q8N9B4 389 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 AURKBQ96GD4 344 aaPredicted RBP14.95□□□□□ -0.02
CLN3-216ENST00000565316 TPT1P8Q9HAU6 139 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 SDR39U1Q9NRG7 319 aaPredicted RBP14.95□□□□□ -0.02
CLN3-216ENST00000565316 THUMPD1Q9NXG2 353 aaKnown RBP14.95□□□□□ -0.02
CLN3-216ENST00000565316 ZIM2Q9NZV7 527 aa14.95□□□□□ -0.02
CLN3-216ENST00000565316 ZNF443Q9Y2A4 671 aaPredicted RBP14.95□□□□□ -0.02
CLN3-216ENST00000565316 HEATR1Q9H583 2144 aaKnown RBP14.95□□□□□ -0.02
CLN3-216ENST00000565316 A0A096LPI6 279 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 A0A0G2JPF8 293 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 TMEM120BA0PK00 339 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 TMEM229AB2RXF0 380 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 HNRNPCL2B2RXH8 293 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 HNRNPCL3B7ZW38 293 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 FRS3O43559 492 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 HNRNPCL1O60812 293 aaKnown RBP14.94□□□□□ -0.02
CLN3-216ENST00000565316 F12P00748 615 aaPredicted RBP14.94□□□□□ -0.02
CLN3-216ENST00000565316 CSF3P09919 207 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 HNRNPCL4P0DMR1 293 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 PRG2P13727 222 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 PAX7P23759 505 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 CRATP43155 626 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 SLC18A1P54219 525 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 DSTNP60981 165 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 BNIP2Q12982 314 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 LARS2Q15031 903 aaKnown RBP14.94□□□□□ -0.02
CLN3-216ENST00000565316 HIKESHIQ53FT3 197 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 C1orf140Q5VVS0 124 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 KLHL24Q6TFL4 600 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 CREB3L2Q70SY1 520 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 GPAT4Q86UL3 456 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 CADM2Q8N3J6 435 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 STK35Q8TDR2 534 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 NANOS1Q8WY41 292 aaKnown RBP14.94□□□□□ -0.02
CLN3-216ENST00000565316 FAM168AQ92567 244 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 PROX1Q92786 737 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 C3orf49Q96BT1 292 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 SPATA9Q9BWV2 254 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 TAPBPLQ9BX59 468 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 TMEM45AQ9NWC5 275 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 TMEM160Q9NX00 188 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 PMF1-BGLAPU3KQ54 211 aa14.94□□□□□ -0.02
CLN3-216ENST00000565316 OR6C65A6NJZ3 312 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 BCHEP06276 602 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms