RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RAD51DO75771 328 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 CD8AP01732 235 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 GPIP06744 558 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 CXCR1P25024 350 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 HTR2AP28223 471 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 PRKAR1BP31321 381 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 SQLEQ14534 574 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 OR7A5Q15622 319 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 STK11Q15831 433 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 GLIPR1L2Q4G1C9 344 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 AGKQ53H12 422 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 OTUD3Q5T2D3 398 aaPredicted RBP13.07□□□□□ -0.32
CLN3-213ENST00000565047 DHRS4L2Q6PKH6 230 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 CADM2Q8N3J6 435 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 LSMEM1Q8N8F7 131 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 KBTBD8Q8NFY9 601 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 OR9K2Q8NGE7 335 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 NFKBIDQ8NI38 313 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 STK35Q8TDR2 534 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 TMEM171Q8WVE6 324 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 WFDC6Q9BQY6 131 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 CPPED1Q9BRF8 314 aaPredicted RBP13.07□□□□□ -0.32
CLN3-213ENST00000565047 TMEM38AQ9H6F2 299 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 DCTN4Q9UJW0 460 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 LAMP3Q9UQV4 416 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 SLC9A8Q9Y2E8 581 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 USF3Q68DE3 2245 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 ZANQ9Y493 2812 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 TRIM64A6NGJ6 449 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 TRIM64BA6NI03 449 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 CLOCKO15516 846 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 TPST2O60704 377 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 COPZ1P61923 177 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 SLC25A3Q00325 362 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 CDK6Q00534 326 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 RUNDC3AQ59EK9 446 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 GCNT6Q5T4J0 391 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 C1orf140Q5VVS0 124 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 RETREG3Q86VR2 466 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 PTOV1Q86YD1 416 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 EPHX4Q8IUS5 362 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 UBE2J2Q8N2K1 259 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 DPP10Q8N608 796 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 SMAP2Q8WU79 429 aaPredicted RBP13.06□□□□□ -0.32
CLN3-213ENST00000565047 FBXW5Q969U6 566 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 GRIP2Q9C0E4 1043 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 C12orf10Q9HB07 376 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 PARPBPQ9NWS1 579 aa13.06□□□□□ -0.32
CLN3-213ENST00000565047 MAGED1Q9Y5V3 778 aaPredicted RBP13.06□□□□□ -0.32
CLN3-213ENST00000565047 NSD1Q96L73 2696 aaPredicted RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 IGKV1D-42A0A075B6H8 117 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 TMEM247A6NEH6 219 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 H7C1Q1 480 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 EDF1O60869 148 aaKnown RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 PPIBP23284 216 aaKnown RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 PCBP3P57721 371 aaKnown RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 RPS4XP62701 263 aaKnown RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 OR7E24Q6IFN5 339 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 REEP3Q6NUK4 255 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 CASP12Q6UXS9 341 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 DNM1P46Q6ZS02 220 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 CREB3L2Q70SY1 520 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 LINGO2Q7L985 606 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 DTX2Q86UW9 622 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 C1orf162Q8NEQ5 155 aaPredicted RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 MFSD8Q8NHS3 518 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 DYDC1Q8WWB3 177 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 MUCL1Q96DR8 90 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 KTI12Q96EK9 354 aaPredicted RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 TRAF4Q9BUZ4 470 aaPredicted RBP13.05□□□□□ -0.32
CLN3-213ENST00000565047 PRR14Q9BWN1 585 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 CXorf56Q9H5V9 222 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 ARMC7Q9H6L4 198 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 B3GAT1Q9P2W7 334 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 DNHD1Q96M86 4753 aa13.05□□□□□ -0.32
CLN3-213ENST00000565047 A0A1W2PR80 420 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 ABCD4O14678 606 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 VAMP5O95183 116 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 LY6G6DO95868 133 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 CD40P25942 277 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 MPGP29372 298 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 SPOCK1Q08629 439 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 SELPLGQ14242 412 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 NHLRC1Q6VVB1 395 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 C17orf78Q8N4C9 275 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 OR52N5Q8NH56 324 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 THOC1Q96FV9 657 aaKnown RBP13.04□□□□□ -0.32
CLN3-213ENST00000565047 BDH2Q9BUT1 245 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 SLC17A5Q9NRA2 495 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 CISD1Q9NZ45 108 aaKnown RBP13.04□□□□□ -0.32
CLN3-213ENST00000565047 SEC14L4Q9UDX3 406 aa13.04□□□□□ -0.32
CLN3-213ENST00000565047 A0A1B0GWA3 101 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 CIB4A0PJX0 185 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 CCT8L1PA6NM43 557 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 C5orf58C9J3I9 102 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 E7EQL1 145 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 ZNF432O94892 652 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 MFN2O95140 757 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 HEXAP06865 529 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 PNMTP11086 282 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms