RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MUC13Q9H3R2 512 aa8.73□□□□□ -1.01
CLK3-208ENST00000562626 KLHL13Q9P2N7 655 aa8.73□□□□□ -1.01
CLK3-208ENST00000562626 HDGFL3Q9Y3E1 203 aa8.73□□□□□ -1.01
CLK3-208ENST00000562626 ZNF175Q9Y473 711 aa8.73□□□□□ -1.01
CLK3-208ENST00000562626 USP9YO00507 2555 aaPredicted RBP8.73□□□□□ -1.01
CLK3-208ENST00000562626 TRBV4-1A0A0J9YWV2 114 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 A0A1W2PNV4 684 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 TCRBV3S1A0A5B6 114 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 NKX2-6A6NCS4 301 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 GJE1A6NN92 205 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 FAM90A27PA6NNH2 459 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 C19orf84I3L1E1 186 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 CYTIPO60759 359 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 GMNNO75496 209 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 CLDN1O95832 211 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 HPRP00739 348 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 HOXD4P09016 255 aaPredicted RBP8.72□□□□□ -1.01
CLK3-208ENST00000562626 PNMTP11086 282 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 GRPRP30550 384 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 MAGEA2P43356 314 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 CLK1P49759 484 aaKnown RBP8.72□□□□□ -1.01
CLK3-208ENST00000562626 SIRPAP78324 504 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 FLOT2Q14254 428 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 SWT1Q5T5J6 900 aaKnown RBP8.72□□□□□ -1.01
CLK3-208ENST00000562626 NUFIP2Q7Z417 695 aaKnown RBP8.72□□□□□ -1.01
CLK3-208ENST00000562626 P4HA3Q7Z4N8 544 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 BTLAQ7Z6A9 289 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 KDM8Q8N371 416 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 CANT1Q8WVQ1 401 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 RND1Q92730 232 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 CPNE4Q96A23 557 aaPredicted RBP8.72□□□□□ -1.01
CLK3-208ENST00000562626 MCUR1Q96AQ8 359 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 SLC25A36Q96CQ1 311 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 DHRS1Q96LJ7 313 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 PSD2Q9BQI7 771 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 TMEM43Q9BTV4 400 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 NMNAT1Q9HAN9 279 aaPredicted RBP8.72□□□□□ -1.01
CLK3-208ENST00000562626 TESMINQ9Y4I5 508 aa8.72□□□□□ -1.01
CLK3-208ENST00000562626 SPIN1Q9Y657 262 aaPredicted RBP8.72□□□□□ -1.01
CLK3-208ENST00000562626 HEATR1Q9H583 2144 aaKnown RBP8.71□□□□□ -1.01
CLK3-208ENST00000562626 TRAV36DV7A0A075B6V5 113 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 A0A087WUU8 490 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 A1L4Q6 167 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 ANKRD65E5RJM6 399 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 M0R082 166 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 AHSA1O95433 338 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 SYNGR4O95473 234 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 CH25HO95992 272 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 CGAP01215 116 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 FABP3P05413 133 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 TMIGD3P0DMS9 266 aaPredicted RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 RHCEP18577 417 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 MAKP20794 623 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 BMP5P22003 454 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 GRNP28799 593 aaKnown RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 AGTR1P30556 359 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 RASSF2P50749 326 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 MAP2K6P52564 334 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 SLC35A1P78382 337 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 GABPB1Q06547 395 aaPredicted RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 TFF3Q07654 80 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 FHL1Q13642 323 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 ZNF74Q16587 644 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 MTX3Q5HYI7 312 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 TMEM211Q6ICI0 200 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 PODNL1Q6PEZ8 512 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 CHMP1BQ7LBR1 199 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 PIWIL3Q7Z3Z3 882 aaKnown RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 TMEM179BQ7Z7N9 219 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 SPATA24Q86W54 205 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 ZDHHC21Q8IVQ6 265 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 TUSC5Q8IXB3 177 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 ZIC4Q8N9L1 334 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 OR52J3Q8NH60 311 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 MFSD8Q8NHS3 518 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 ZNF417Q8TAU3 575 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 SLC7A13Q8TCU3 470 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 SSC4DQ8WTU2 575 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 TMEM239Q8WW34 195 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 STARD4Q96DR4 205 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 ZNF587Q96SQ5 575 aaPredicted RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 TM9SF2Q99805 663 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 FNDC11Q9BVV2 318 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 POLR2J2Q9GZM3 115 aaKnown RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 POLR2J3Q9H1A7 115 aaKnown RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 IL1RAPQ9NPH3 570 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 B3GAT1Q9P2W7 334 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 STOML1Q9UBI4 398 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 MCTS1Q9ULC4 181 aaKnown RBP8.71□□□□□ -1.02
CLK3-208ENST00000562626 TRAPPC4Q9Y296 219 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 PKDREJQ9NTG1 2253 aa8.71□□□□□ -1.02
CLK3-208ENST00000562626 DHRS12A0PJE2 317 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 AQP7P3A6NL99 342 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 AQP12BA6NM10 295 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 MS4A18H0YCH9 400 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 SS18L1O75177 396 aaPredicted RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 IL2RAP01589 272 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 GPIP06744 558 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 H1F0P07305 194 aaKnown RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 THRBP10828 461 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 208.8 ms