RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PRPS2P11908 318 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 RNH1P13489 461 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 COX5AP20674 150 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 KITLGP21583 273 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 EPHX2P34913 555 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 CRYBB1P53674 252 aaPredicted RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PKNOX1P55347 436 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 RGS8P57771 180 aaPredicted RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 HILS1P60008 231 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ERVPABLB-1P60509 514 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 RPS14P62263 151 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 UBE2IP63279 158 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 LIPEQ05469 1076 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 FCHO2Q0JRZ9 810 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ASPHQ12797 758 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PPIL2Q13356 520 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 MAB21L1Q13394 359 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 GRB7Q14451 532 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 LTB4RQ15722 352 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 DUSP7Q16829 419 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ISXQ2M1V0 245 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 FAM83EQ2M2I3 478 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 NHLRC3Q5JS37 347 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PIP5KL1Q5T9C9 394 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 SLC8B1Q6J4K2 584 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 UFSP1Q6NVU6 142 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 DEGS2Q6QHC5 323 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 LRRC31Q6UY01 552 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 SLC7A5P1Q8MH63 180 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 OR6T1Q8NGN1 323 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 CCDC12Q8WUD4 166 aaPredicted RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PDCD6IPQ8WUM4 868 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 MITD1Q8WV92 249 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 TSEN15Q8WW01 171 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ANKRD7Q92527 254 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 MRPS31Q92665 395 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 SLC38A4Q969I6 547 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 SGK3Q96BR1 496 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 HAVCR1Q96D42 359 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 NUS1Q96E22 293 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ZBED3Q96IU2 234 aaPredicted RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 C18orf12Q96KH6 178 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 MBOAT4Q96T53 435 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 MCHR1Q99705 422 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 LLPHQ9BRT6 129 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 SYT11Q9BT88 431 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 SPZ1Q9BXG8 430 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 BARHL1Q9BZE3 327 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ADNPQ9H2P0 1102 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 RBKSQ9H477 322 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF385DQ9H6B1 395 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 AUNIPQ9H7T9 357 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PSTPIP2Q9H939 334 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 CAB39LQ9H9S4 337 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 INPP5EQ9NRR6 644 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 CUTCQ9NTM9 273 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 B3GNT2Q9NY97 397 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 EMC3Q9P0I2 261 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PDP1Q9P0J1 537 aaPredicted RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 STX18Q9P2W9 335 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PEF1Q9UBV8 284 aaKnown RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 PACSIN2Q9UNF0 486 aaPredicted RBP2.5□□□□□ -2.01
TRAV28-201ENST00000557548 COPS3Q9UNS2 423 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ERVW-1Q9UQF0 538 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 ATP6V1DQ9Y5K8 247 aa2.5□□□□□ -2.01
TRAV28-201ENST00000557548 EIF4G3O43432 1585 aaKnown RBP2.49□□□□□ -2.01
TRAV28-201ENST00000557548 TRAV9-2A0A087WT02 112 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF705EA8MWA4 302 aaPredicted RBP2.49□□□□□ -2.01
TRAV28-201ENST00000557548 EPM2AB3EWF7 344 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 E7ESA3 106 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 TEX46H3BTG2 121 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 PSMD11O00231 422 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 HIP1O00291 1037 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 SLC17A2O00624 439 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 EIF3HO15372 352 aaKnown RBP eCLIP2.49□□□□□ -2.01
TRAV28-201ENST00000557548 LATO43561 262 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 PSTPIP1O43586 416 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 SULT1B1O43704 296 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 ZG16O60844 167 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 OR2J3O76001 311 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 LYPD3O95274 346 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 OXSR1O95747 527 aaPredicted RBP2.49□□□□□ -2.01
TRAV28-201ENST00000557548 CRYGCP07315 174 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 H2AFZP0C0S5 128 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 CT62P0C5K7 136 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 LAMP1P11279 417 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 MSR1P21757 451 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 HTR1FP30939 366 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 OPRD1P41143 372 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 RPS5P46782 204 aaKnown RBP2.49□□□□□ -2.01
TRAV28-201ENST00000557548 CSNK1EP49674 416 aaKnown RBP2.49□□□□□ -2.01
TRAV28-201ENST00000557548 PRELPP51888 382 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 HMGCS2P54868 508 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 KCNJ2P63252 427 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 MRPS11P82912 194 aaKnown RBP2.49□□□□□ -2.01
TRAV28-201ENST00000557548 NCF4Q15080 339 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 ANGPT1Q15389 498 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 TGFBIQ15582 683 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF77Q15935 545 aa2.49□□□□□ -2.01
TRAV28-201ENST00000557548 MRPL23Q16540 153 aaKnown RBP2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms