RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PCDH15Q96QU1 1955 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 NINQ8N4C6 2090 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 TMEM129A0AVI4 362 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 ZSCAN5BA6NJL1 495 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 RIIAD1A6NNX1 92 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 B4DXG7 233 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 BHLHE40O14503 412 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 CDC42EP2O14613 210 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 PAICSP22234 425 aaKnown RBP11.57□□□□□ -0.56
SHMT2-229ENST00000557348 HTR1FP30939 366 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 HTR2BP41595 481 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 CAPZA2P47755 286 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 NR0B1P51843 470 aaKnown RBP11.57□□□□□ -0.56
SHMT2-229ENST00000557348 CDH11P55287 796 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 BTG1P62324 171 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 MC2RQ01718 297 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 MLLT11Q13015 90 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-229ENST00000557348 CLEC12AQ5QGZ9 265 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 DDI2Q5TDH0 399 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 LCN1P1Q5VSP4 162 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 KIRREL2Q6UWL6 708 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 PRSS58Q8IYP2 241 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 PFN4Q8NHR9 129 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 ENKURQ8TC29 256 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 NACC2Q96BF6 587 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 RADILQ96JH8 1075 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 SAMD8Q96LT4 415 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 ADOQ96SZ5 270 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 JAM3Q9BX67 310 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 TBL1XR1Q9BZK7 514 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 CMC2Q9NRP2 79 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 SSR3Q9UNL2 185 aa11.57□□□□□ -0.56
SHMT2-229ENST00000557348 ARID1BQ8NFD5 2236 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-229ENST00000557348 A0A1W2PQ72 361 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ELOA3DA6NLF2 546 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-229ENST00000557348 PRR33A8MZF0 331 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 B4E171 279 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 C9J4A7 227 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ERVH48-1M5A8F1 160 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 MEN1O00255 615 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ORC5O43913 435 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 CDC40O60508 579 aaKnown RBP eCLIP11.56□□□□□ -0.56
SHMT2-229ENST00000557348 PTP4A3O75365 173 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 NDUFB2O95178 105 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 PTHP01270 115 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ZNF3P17036 446 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 PGCP20142 388 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 MAKP20794 623 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 CCKBRP32239 447 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 TSPAN7P41732 249 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 SLC26A5P58743 744 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 PRPS1P60891 318 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 RNF4P78317 190 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 SPHARQ15513 63 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 MED22Q15528 200 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ISXQ2M1V0 245 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ELOA3BQ3SY89 546 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 AADACL4Q5VUY2 407 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 HACD4Q5VWC8 232 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 LAPTM4BQ86VI4 370 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 NANOGP1Q8N7R0 232 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ZNF321PQ8N8H1 164 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 GALNT11Q8NCW6 608 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ELOA3Q8NG57 546 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 OR4Q3Q8NH05 313 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 LIPHQ8WWY8 451 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 SLC25A46Q96AG3 418 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 C3orf49Q96BT1 292 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 OMA1Q96E52 524 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 RNFT2Q96EX2 444 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 CRB3Q9BUF7 120 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 MEPEQ9NQ76 525 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-229ENST00000557348 RXFP3Q9NSD7 469 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 RBFOX1Q9NWB1 397 aaKnown RBP11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ADAM30Q9UKF2 790 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 ZNF337Q9Y3M9 751 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 TECTAO75443 2155 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 CABIN1Q9Y6J0 2220 aa11.56□□□□□ -0.56
SHMT2-229ENST00000557348 SLC22A31A6NKX4 558 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CTDSP2O14595 271 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 ICOSLGO75144 302 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 TPPPO94811 219 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 PRKAR1AP10644 381 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 PEPDP12955 493 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CTRB1P17538 263 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 HK1P19367 917 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 ABCD3P28288 659 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SLC1A3P43003 542 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SUMO3P55854 103 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 PPP3R1P63098 170 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CRYZQ08257 329 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 POU4F2Q12837 409 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 ZNF79Q15937 498 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CTRB2Q6GPI1 263 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 TMEM205Q6UW68 189 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 C5orf46Q6UWT4 87 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 LANCL3Q6ZV70 420 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SPATC1Q76KD6 591 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CXXC5Q7LFL8 322 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CPEB2Q7Z5Q1 589 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms