RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 S100A3P33764 101 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 PDLIM4P50479 330 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 RPL14P50914 215 aaKnown RBP11.23□□□□□ -0.61
PTCH1-218ENST00000548945 ABCE1P61221 599 aaKnown RBP11.23□□□□□ -0.61
PTCH1-218ENST00000548945 LRRC74AQ0VAA2 488 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 EPS8Q12929 822 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 MST1LQ2TV78 715 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 C3orf36Q3SXR2 165 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 FAM174BQ3ZCQ3 159 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 SPANXN4Q5MJ08 99 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 OTUD3Q5T2D3 398 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-218ENST00000548945 C9orf135Q5VTT2 229 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 OGFOD2Q6N063 350 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 ZIC4Q8N9L1 334 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 OR9K2Q8NGE7 335 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 WDR60Q8WVS4 1066 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 DNAJA3Q96EY1 480 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 ZNF317Q96PQ6 595 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-218ENST00000548945 SSU72Q9NP77 194 aaKnown RBP11.23□□□□□ -0.61
PTCH1-218ENST00000548945 HAO1Q9UJM8 370 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 FBXO9Q9UK97 447 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-218ENST00000548945 ZC3H12DA2A288 527 aaKnown RBP11.22□□□□□ -0.61
PTCH1-218ENST00000548945 LIPT2A6NK58 231 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 AQP7P3A6NL99 342 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 ITM2AO43736 263 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 PDE5AO76074 875 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 VAMP5O95183 116 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 DBIP07108 87 aaKnown RBP11.22□□□□□ -0.61
PTCH1-218ENST00000548945 CHRM4P08173 479 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 IL7RP16871 459 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 ZNF16P17020 682 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-218ENST00000548945 LBPP18428 481 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 NR4A2P43354 598 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 SNRPD2P62316 118 aaKnown RBP11.22□□□□□ -0.61
PTCH1-218ENST00000548945 SYPL1Q16563 259 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 FAM166AQ6J272 317 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 AAED1Q7RTV5 226 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 HMGN2P46Q86SG4 172 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 RNF130Q86XS8 419 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 ANKFN1Q8N957 763 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 PPP1R36Q96LQ0 422 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 PIMREGQ9BSJ6 248 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 KATNB1Q9BVA0 655 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 TMEM45AQ9NWC5 275 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 KCNS2Q9ULS6 477 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 MOKQ9UQ07 419 aa11.22□□□□□ -0.61
PTCH1-218ENST00000548945 LOC390937A0A1W2PQ73 354 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 CCDC154A6NI56 674 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 SRD5A1P18405 259 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 CXCR1P25024 350 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 SERPINF1P36955 418 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 SLC18A1P54219 525 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 CEACAM7Q14002 265 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 CHI3L2Q15782 390 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 ZSWIM7Q19AV6 140 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 KRTAP24-1Q3LI83 254 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 HIKESHIQ53FT3 197 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 MRPL2Q5T653 305 aaKnown RBP11.21□□□□□ -0.61
PTCH1-218ENST00000548945 PEX5LQ8IYB4 626 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 TMEM99Q8N816 258 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 FAM169BQ8N8A8 192 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 ZNF540Q8NDQ6 660 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 MAGEE2Q8TD90 523 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-218ENST00000548945 FBXO17Q96EF6 278 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 ZNF385AQ96PM9 386 aaKnown RBP11.21□□□□□ -0.61
PTCH1-218ENST00000548945 SORCS2Q96PQ0 1159 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 SLC38A2Q96QD8 506 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 PANX1Q96RD7 426 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 SORT1Q99523 831 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 KCNS3Q9BQ31 491 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 MEAF6Q9HAF1 191 aa11.21□□□□□ -0.61
PTCH1-218ENST00000548945 CRNNQ9UBG3 495 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-218ENST00000548945 TENM1Q9UKZ4 2725 aa11.21□□□□□ -0.62
PTCH1-218ENST00000548945 DSPPQ9NZW4 1301 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 A0A096LPI6 279 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 ARPC4-TTLL3A0A0A6YYG9 625 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 IGHV1-18A0A0C4DH31 117 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 TMEM120BA0PK00 339 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 CDHR4A6H8M9 788 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 A8MVM7 634 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 B9A039 149 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 ZNF587BE7ETH6 402 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 TM9SF1O15321 606 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 LY6HO94772 140 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 AKR7A3O95154 331 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 KRT75O95678 551 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 CRYAAP02489 173 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 PGRP06401 933 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 NR2F1P10589 423 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 HOXB1P14653 301 aaPredicted RBP11.2□□□□□ -0.62
PTCH1-218ENST00000548945 HNF1AP20823 631 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 IGFBP5P24593 272 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 SLC1A6P48664 564 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 P2RY4P51582 365 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 SH3BGRP55822 239 aaPredicted RBP11.2□□□□□ -0.62
PTCH1-218ENST00000548945 GGTLC2Q14390 218 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 OR7A5Q15622 319 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 EFNB3Q15768 340 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 TBRG1Q3YBR2 411 aa11.2□□□□□ -0.62
PTCH1-218ENST00000548945 TMEM225Q6GV28 225 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms