RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ACTBP60709 375 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 ACTG1P63261 375 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 SIRPAP78324 504 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 C1orf189Q5VU69 101 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 Q6ZTK2 550 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 CDH26Q8IXH8 852 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 GPR137Q96N19 417 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 PPP1R3EQ9H7J1 279 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 MEMO1Q9Y316 297 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 CEP290O15078 2479 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 GGT3PA6NGU5 568 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 TVP23AA6NH52 213 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 A8MVJ9 347 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 FABP1P07148 127 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 SNRPEP62304 92 aaKnown RBP13.21□□□□□ -0.29
LIMS1-215ENST00000544547 RAB33AQ14088 237 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 MFSD13AQ14CX5 517 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 SLC6A19Q695T7 634 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 LAMTOR1Q6IAA8 161 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 FAM71E1Q6IPT2 247 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 LCN10Q6JVE6 187 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.21□□□□□ -0.296e-12■■■■■ 38.1
LIMS1-215ENST00000544547 TRAM1L1Q8N609 369 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 MAN2C1Q9NTJ4 1040 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 CLEC4EQ9ULY5 219 aa13.21□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF736B4DX44 427 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-215ENST00000544547 WISP3O95389 354 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-215ENST00000544547 TSPAN15O95858 294 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 TNFP01375 233 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 CSF2RAP15509 400 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 DEFB134Q4QY38 66 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 ARHGAP11AQ6P4F7 1023 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 KLHDC8AQ8IYD2 350 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 NPAS1Q99742 590 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 SPHK1Q9NYA1 384 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 DOCK1Q14185 1865 aa13.21□□□□□ -0.3
LIMS1-215ENST00000544547 TRIP12Q14669 1992 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-215ENST00000544547 GPR31O00270 319 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 SULT1B1O43704 296 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 SLC6A12P48065 614 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 MEOX2P50222 304 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 OR2B8PP59922 312 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 S100A12P80511 92 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 POU4F2Q12837 409 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 CAMK2DQ13557 499 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 ALG10BQ5I7T1 473 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 C12orf73Q69YU5 71 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM150AQ86TG1 271 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM200AQ86VY9 491 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 OVCA2Q8WZ82 227 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 PHB2Q99623 299 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 PARP12Q9H0J9 701 aaKnown RBP13.2□□□□□ -0.3
LIMS1-215ENST00000544547 RETREG1Q9H6L5 497 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 SIDT1Q9NXL6 827 aaKnown RBP13.2□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM189-UBE2V1I3L0A0 370 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 RHOP08100 348 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 OR8G3PP0DMU2 310 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 ICAM2P13598 275 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 FUT1P19526 365 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 DHPSP49366 369 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-215ENST00000544547 RPE65Q16518 533 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 C12orf76Q8N812 135 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-215ENST00000544547 PLA2G15Q8NCC3 412 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 BPIFCQ8NFQ6 507 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 PTDSS2Q9BVG9 487 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 NRIP3Q9NQ35 241 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 TEX13DA0A0J9YY54 714 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-215ENST00000544547 C11orf98E9PRG8 122 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 HMGN4O00479 90 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 KHNYNO15037 678 aaKnown RBP13.2□□□□□ -0.3
LIMS1-215ENST00000544547 RASGEF1BQ0VAM2 473 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 RHEBQ15382 184 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 C14orf28Q4W4Y0 310 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 LEG1Q6P5S2 330 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 CD300LGQ6UXG3 332 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 RHOUQ7L0Q8 258 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 NAA40Q86UY6 237 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 CBLN2Q8IUK8 224 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 RASGEF1AQ8N9B8 481 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 SSX3Q99909 188 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 TCEAL7Q9BRU2 100 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 PIGMQ9H3S5 423 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 SPHK2Q9NRA0 654 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 CREBZFQ9NS37 354 aa13.2□□□□□ -0.3
LIMS1-215ENST00000544547 ADRB3P13945 408 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 CD22P20273 847 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 NME2P22392 152 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ENPP1P22413 925 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ADH6P28332 368 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 RAB11BQ15907 218 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 LRRTM1Q86UE6 522 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 BPIFB2Q8N4F0 458 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 OR2AJ1Q8NGZ0 328 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 PHOSPHO1Q8TCT1 267 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 CDS1Q92903 461 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 CASD1Q96PB1 797 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 OR7D2Q96RA2 312 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 MTHFD2LQ9H903 347 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 MARCH5Q9NX47 278 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 MRPS10P82664 201 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms