RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PDLIM1O00151 329 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 SOCS2O14508 198 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 PRRG2O14669 202 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 SMAD9O15198 467 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 WDR1O75083 606 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 OR5F1O95221 314 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 ACADSP16219 412 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 ENPP1P22413 925 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 RRM2P31350 389 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 EIF1AXP47813 144 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 DIO1P49895 249 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 UGT2B15P54855 530 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 COPZ1P61923 177 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 H3F3AP84243 136 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 RBPJQ06330 500 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 FOXF2Q12947 444 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 ZNF239Q16600 458 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 C4orf17Q53FE4 359 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 SWT1Q5T5J6 900 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 HBMQ6B0K9 141 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 TMPPEQ6ZT21 453 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 LIX1LQ8IVB5 337 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 PM20D2Q8IYS1 436 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 OFCC1Q8IZS5 231 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 MBD3L2Q8NHZ7 208 aaPredicted RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 TMEM255BQ8WV15 326 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 DNAJA4Q8WW22 397 aaPredicted RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 ROBO4Q8WZ75 1007 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 OSTF1Q92882 214 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 TAAR8Q969N4 342 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 CCDC120Q96HB5 630 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 OR5B2Q96R09 309 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 TRIB1Q96RU8 372 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 RBM4BQ9BQ04 359 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 FNDC11Q9BVV2 318 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 RBM4Q9BWF3 364 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 POLR2J2Q9GZM3 115 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 POLR2J3Q9H1A7 115 aaKnown RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 NMNAT1Q9HAN9 279 aaPredicted RBP11.62□□□□□ -0.55
CCDC42-202ENST00000539522 TMEM27Q9HBJ8 222 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 C20orf141Q9NUB4 165 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 ALKBH4Q9NXW9 302 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 TESMINQ9Y4I5 508 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 MYO7BQ6PIF6 2116 aa11.62□□□□□ -0.55
CCDC42-202ENST00000539522 A0A0G2JNJ9 132 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 WIPF3A6NGB9 483 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 LIPT2A6NK58 231 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 A8MVM7 634 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 E9PLN8 166 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 CCL21O00585 134 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 PIP5K1CO60331 668 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 GADD45GO95257 159 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 HPRP00739 348 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 BGLAPP02818 100 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 H1F0P07305 194 aaKnown RBP11.61□□□□□ -0.55
CCDC42-202ENST00000539522 CXCR1P25024 350 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 CEACAM8P31997 349 aaPredicted RBP11.61□□□□□ -0.55
CCDC42-202ENST00000539522 NTF4P34130 210 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 LIMS1P48059 325 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 ALDH3A2P51648 485 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 IST1P53990 364 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 SPIBQ01892 262 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 DAG1Q14118 895 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 PON3Q15166 354 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 SEC23BQ15437 767 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 MICAQ29983 383 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.61□□□□□ -0.55
CCDC42-202ENST00000539522 OTUD3Q5T2D3 398 aaPredicted RBP11.61□□□□□ -0.55
CCDC42-202ENST00000539522 C1orf140Q5VVS0 124 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 TBPL2Q6SJ96 375 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 TMEM179BQ7Z7N9 219 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 EPHX4Q8IUS5 362 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 MEIOBQ8N635 442 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 PIK3C3Q8NEB9 887 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 PFN4Q8NHR9 129 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 MAGEE2Q8TD90 523 aaPredicted RBP11.61□□□□□ -0.55
CCDC42-202ENST00000539522 GIPC3Q8TF64 312 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 SLC25A43Q8WUT9 341 aaPredicted RBP11.61□□□□□ -0.55
CCDC42-202ENST00000539522 MOGAT1Q96PD6 335 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 VKORC1Q9BQB6 163 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 POTEKPQ9BYX7 375 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 RNF122Q9H9V4 155 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 CALHM2Q9HA72 323 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 USE1Q9NZ43 259 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 PDP1Q9P0J1 537 aaPredicted RBP11.61□□□□□ -0.55
CCDC42-202ENST00000539522 RPS6KB2Q9UBS0 482 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 Q9UFV3 132 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 TMCC3Q9ULS5 477 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 LYVE1Q9Y5Y7 322 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 U3KQV3 271 aa11.61□□□□□ -0.55
CCDC42-202ENST00000539522 A0A1W2PRQ8 180 aa11.6□□□□□ -0.55
CCDC42-202ENST00000539522 ELOA3DA6NLF2 546 aaPredicted RBP11.6□□□□□ -0.55
CCDC42-202ENST00000539522 FIGNL2A6NMB9 653 aa11.6□□□□□ -0.55
CCDC42-202ENST00000539522 PMS2P2O95744 297 aa11.6□□□□□ -0.55
CCDC42-202ENST00000539522 PNMTP11086 282 aa11.6□□□□□ -0.55
CCDC42-202ENST00000539522 GABRA1P14867 456 aa11.6□□□□□ -0.55
CCDC42-202ENST00000539522 PRKACGP22612 351 aa11.6□□□□□ -0.55
CCDC42-202ENST00000539522 EDNRAP25101 427 aa11.6□□□□□ -0.55
CCDC42-202ENST00000539522 RPS5P46782 204 aaKnown RBP11.6□□□□□ -0.55
CCDC42-202ENST00000539522 CLK1P49759 484 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms