RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RPL22P35268 128 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 RPL4P36578 427 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 NDUFV1P49821 464 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 SUMO3P55854 103 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 UCP3P55916 312 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 VSX2P58304 361 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 DAOAP59103 153 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 NCS1P62166 190 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 RPL19P84098 196 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 B4GALNT1Q00973 533 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 FMO1Q01740 532 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 OGDHQ02218 1023 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 CACNG1Q06432 222 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 SRSF4Q08170 494 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 SF3A3Q12874 501 aaKnown RBP eCLIP5.05□□□□□ -1.6
CD44-236ENST00000533222 PTP4A2Q12974 167 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 KLF10Q13118 480 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 RCAN2Q14206 197 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 OPCMLQ14982 345 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 SF3A2Q15428 464 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 TAF9Q16594 264 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 MEP1BQ16820 701 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 CD300EQ496F6 205 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 GLYR1Q49A26 553 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 HIKESHIQ53FT3 197 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 TSTD2Q5T7W7 516 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 PRAMEF8Q5VWM4 474 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 PRAMEF7Q5VXH5 474 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 C18orf63Q68DL7 685 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 CYB5R2Q6BCY4 276 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 TBC1D3CQ6IPX1 549 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 LCN8Q6JVE9 175 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 APOBEC3HQ6NTF7 200 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 DOK6Q6PKX4 331 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 C19orf48Q6RUI8 117 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 SPESP1Q6UW49 350 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 ATRAIDQ6UW56 229 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 SSX7Q7RTT5 188 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 RD3Q7Z3Z2 195 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 TMED4Q7Z7H5 227 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 MRGPREQ86SM8 312 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 LINC01551Q86U37 167 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 PTOV1Q86YD1 416 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 LDLRAD3Q86YD5 345 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 TBC1D3Q8IZP1 549 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 PNLDC1Q8NA58 520 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 NHLRC2Q8NBF2 726 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 OR1S1Q8NH92 325 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 THAP6Q8TBB0 222 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 ZNF596Q8TC21 504 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 M1APQ8TC57 530 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 RXFP4Q8TDU9 374 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 RNF133Q8WVZ7 376 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 ASB10Q8WXI3 467 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 MYEOVQ96EZ4 313 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 SAT2Q96F10 170 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 SMIM10Q96HG1 83 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 ADGRG7Q96K78 797 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 PRAP1Q96NZ9 151 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 TSNAXQ99598 290 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 SULT4A1Q9BR01 284 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 GLIS2Q9BZE0 524 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 ARV1Q9H2C2 271 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 HIPK2Q9H2X6 1198 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 ST6GALNAC4Q9H4F1 302 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 SMURF2Q9HAU4 748 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 GBA2Q9HCG7 927 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 OSER1Q9NX31 292 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 ADA2Q9NZK5 511 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 RNF181Q9P0P0 153 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 GSKIPQ9P0R6 139 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 UBQLN1Q9UMX0 589 aaKnown RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 TFR2Q9UP52 801 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 CORO2BQ9UQ03 480 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 ANGPT4Q9Y264 503 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 HS3ST4Q9Y661 456 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 COLEC10Q9Y6Z7 277 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 TP53BP1Q12888 1972 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 SHANK3Q9BYB0 1731 aa5.05□□□□□ -1.6
CD44-236ENST00000533222 COL5A2P05997 1499 aaPredicted RBP5.05□□□□□ -1.6
CD44-236ENST00000533222 SPATA31D1Q6ZQQ2 1576 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 TMEM200CA6NKL6 621 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 HSPB2A8KAH6 182 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 SUPT3HB4E1H0 165 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 TISP43B9A030 160 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 B9A039 149 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 ZNF587BE7ETH6 402 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 SOCS2O14508 198 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 EI24O14681 340 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 NARSO43776 548 aaKnown RBP5.04□□□□□ -1.6
CD44-236ENST00000533222 PRAF2O60831 178 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 DNAJB6O75190 326 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 B3GAT3O94766 335 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 FGF19O95750 216 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 CD2P06729 351 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 ANXA4P09525 319 aaPredicted RBP5.04□□□□□ -1.6
CD44-236ENST00000533222 NPSP0C0P6 89 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 GKN3PP0CG01 181 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 HSD17B1P14061 328 aa5.04□□□□□ -1.6
CD44-236ENST00000533222 KCNE1P15382 129 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms