RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 KRTAP1-1Q07627 177 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 TNFAIP8L3Q5GJ75 292 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 C1QTNF12Q5T7M4 302 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 VRK2Q86Y07 508 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 TMEM99Q8N816 258 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 TMEM45BQ96B21 275 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 ADAM19Q9H013 955 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 THUMPD1Q9NXG2 353 aaKnown RBP12.93□□□□□ -0.34
VPS28-215ENST00000531924 ADAM21Q9UKJ8 722 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 ZNF443Q9Y2A4 671 aaPredicted RBP12.93□□□□□ -0.34
VPS28-215ENST00000531924 IGHV4-30-2A0A087WSY4 118 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 A8MV72 311 aaPredicted RBP12.92□□□□□ -0.34
VPS28-215ENST00000531924 GTF2E2P29084 291 aaKnown RBP12.92□□□□□ -0.34
VPS28-215ENST00000531924 WDR4P57081 412 aaKnown RBP12.92□□□□□ -0.34
VPS28-215ENST00000531924 HMBOX1Q6NT76 420 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 ZNF836Q6ZNA1 936 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 DNM1P46Q6ZS02 220 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 MIER2Q8N344 545 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 WDR31Q8NA23 367 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 SLC38A5Q8WUX1 472 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 HTRA1Q92743 480 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 AURKBQ96GD4 344 aaPredicted RBP12.92□□□□□ -0.34
VPS28-215ENST00000531924 PIF1Q9H611 641 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 MANSC1Q9H8J5 431 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 TPT1P8Q9HAU6 139 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 TMEM45AQ9NWC5 275 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 ZIM2Q9NZV7 527 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 RAB21Q9UL25 225 aa12.92□□□□□ -0.34
VPS28-215ENST00000531924 A0A096LPI6 279 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 A0A0G2JPF8 293 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 AQP7P3A6NL99 342 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 HNRNPCL2B2RXH8 293 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 HNRNPCL3B7ZW38 293 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 C5orf58C9J3I9 102 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 ZNF587BE7ETH6 402 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 PDLIM1O00151 329 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 KLF11O14901 512 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 UBDO15205 165 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 HNRNPCL1O60812 293 aaKnown RBP12.91□□□□□ -0.34
VPS28-215ENST00000531924 SNNO75324 88 aaPredicted RBP12.91□□□□□ -0.34
VPS28-215ENST00000531924 VAMP5O95183 116 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 AHSA1O95433 338 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 THBS1P07996 1170 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 TFPTP0C1Z6 253 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 ZCCHC18P0CG32 403 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 HNRNPCL4P0DMR1 293 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 APOBEC3AP31941 199 aaPredicted RBP12.91□□□□□ -0.34
VPS28-215ENST00000531924 POLR2JP52435 117 aaKnown RBP12.91□□□□□ -0.34
VPS28-215ENST00000531924 UBE2NP61088 152 aaKnown RBP12.91□□□□□ -0.34
VPS28-215ENST00000531924 BNIP2Q12982 314 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 CHRFAM7AQ494W8 412 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 C1orf140Q5VVS0 124 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 PRAMEF8Q5VWM4 474 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 PRAMEF7Q5VXH5 474 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 B3GLCTQ6Y288 498 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 MSANTD1Q6ZTZ1 278 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 CXXC5Q7LFL8 322 aaKnown RBP12.91□□□□□ -0.34
VPS28-215ENST00000531924 FAM168AQ92567 244 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 ZNF385AQ96PM9 386 aaKnown RBP12.91□□□□□ -0.34
VPS28-215ENST00000531924 AMBRA1Q9C0C7 1298 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 RAD21L1Q9H4I0 556 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 RPS6KB2Q9UBS0 482 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 IFT52Q9Y366 437 aa12.91□□□□□ -0.34
VPS28-215ENST00000531924 OR6C65A6NJZ3 312 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 ATP6V1G2-DDX39BF2Z307 99 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 H7C417 338 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 CSF3P09919 207 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 SLC25A16P16260 332 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 STX1BP61266 288 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 MAGOHP61326 146 aaKnown RBP12.9□□□□□ -0.34
VPS28-215ENST00000531924 SLC9B1Q4ZJI4 515 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 HIKESHIQ53FT3 197 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 ZNF311Q5JNZ3 666 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 RPS26P11Q5JNZ5 115 aaPredicted RBP12.9□□□□□ -0.34
VPS28-215ENST00000531924 RNF220Q5VTB9 566 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 C11orf71Q6IPW1 123 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 PODNL1Q6PEZ8 512 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 HIPK1Q86Z02 1210 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 CLIP4Q8N3C7 705 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 ZIC4Q8N9L1 334 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 OR10H5Q8NGA6 315 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 SLC25A36Q96CQ1 311 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 FBXO17Q96EF6 278 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 TMEM19Q96HH6 336 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 SPATA9Q9BWV2 254 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 OBP2BQ9NPH6 170 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 SDR39U1Q9NRG7 319 aaPredicted RBP12.9□□□□□ -0.34
VPS28-215ENST00000531924 SLC6A13Q9NSD5 602 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 MOKQ9UQ07 419 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 RASD1Q9Y272 281 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 FKBP7Q9Y680 259 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 CADP27708 2225 aa12.9□□□□□ -0.34
VPS28-215ENST00000531924 DSPPQ9NZW4 1301 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 ELOA3DA6NLF2 546 aaPredicted RBP12.89□□□□□ -0.35
VPS28-215ENST00000531924 GPRIN2O60269 458 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 LGI1O95970 557 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 CRYAAP02489 173 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 PRG2P13727 222 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 PAX7P23759 505 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 ACAA2P42765 397 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms