RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C10orf105Q8TEF2 133 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 ZNF385AQ96PM9 386 aaKnown RBP9.93□□□□□ -0.82
VPS28-214ENST00000531032 OR52E6Q96RD3 313 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 ZBTB18Q99592 522 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 SF3B5Q9BWJ5 86 aaKnown RBP9.93□□□□□ -0.82
VPS28-214ENST00000531032 PIF1Q9H611 641 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 MANSC1Q9H8J5 431 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 PNPOQ9NVS9 261 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 THAP1Q9NVV9 213 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 CDC42EP3Q9UKI2 254 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 GPR45Q9Y5Y3 372 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 ATP23Q9Y6H3 246 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 CDHR4A6H8M9 788 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 AQP7P3A6NL99 342 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 ATP6V1G2-DDX39BF2Z307 99 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 AKR7A3O95154 331 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 WNT11O96014 354 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 GPIP06744 558 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 NR2F1P10589 423 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 KITP10721 976 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 BMP4P12644 408 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 ACAA2P42765 397 aaKnown RBP9.92□□□□□ -0.82
VPS28-214ENST00000531032 P2RY4P51582 365 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 MVDP53602 400 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 PRPS1P60891 318 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 CHRNB3Q05901 458 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 CEACAM7Q14002 265 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 MST1LQ2TV78 715 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 BEND6Q5SZJ8 279 aaPredicted RBP9.92□□□□□ -0.82
VPS28-214ENST00000531032 NXNQ6DKJ4 435 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 ZNF621Q6ZSS3 439 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 SPATA19Q7Z5L4 167 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 PEX5LQ8IYB4 626 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 GOLGA6L1Q8N7Z2 621 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 TMEM99Q8N816 258 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 PNPT1Q8TCS8 783 aaKnown RBP9.92□□□□□ -0.82
VPS28-214ENST00000531032 NANOS1Q8WY41 292 aaKnown RBP9.92□□□□□ -0.82
VPS28-214ENST00000531032 TMEM158Q8WZ71 300 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 PROX1Q92786 737 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 TMBIM4Q9HC24 238 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 OBP2BQ9NPH6 170 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 RLIMQ9NVW2 624 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 PMF1-BGLAPU3KQ54 211 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 ARFGEF3Q5TH69 2177 aa9.92□□□□□ -0.82
VPS28-214ENST00000531032 SLCO1B7G3V0H7 640 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 HDAC3O15379 428 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 KRT75O95678 551 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 F12P00748 615 aaPredicted RBP9.91□□□□□ -0.82
VPS28-214ENST00000531032 GSNP06396 782 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 IGHV4-31P0DP07 118 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 CXCR1P25024 350 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 WDR4P57081 412 aaKnown RBP9.91□□□□□ -0.82
VPS28-214ENST00000531032 OR7A5Q15622 319 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 SWI5Q1ZZU3 235 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 LIN52Q52LA3 116 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 HIKESHIQ53FT3 197 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 RNF220Q5VTB9 566 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 KLHL24Q6TFL4 600 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 ZNF836Q6ZNA1 936 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 AAED1Q7RTV5 226 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 ABHD12BQ7Z5M8 362 aaPredicted RBP9.91□□□□□ -0.82
VPS28-214ENST00000531032 VRK2Q86Y07 508 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 GLB1L3Q8NCI6 653 aaPredicted RBP9.91□□□□□ -0.82
VPS28-214ENST00000531032 SLC6A13Q9NSD5 602 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 P2RX2Q9UBL9 471 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 MOKQ9UQ07 419 aa9.91□□□□□ -0.82
VPS28-214ENST00000531032 SVEP1Q4LDE5 3571 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 IGHV1-18A0A0C4DH31 117 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 A8MVM7 634 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 VWC2LB2RUY7 222 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 RFXANKO14593 260 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 PHF1O43189 567 aaPredicted RBP9.9□□□□□ -0.82
VPS28-214ENST00000531032 FRS3O43559 492 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 NPIPB7O75200 414 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 LY6HO94772 140 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 VAMP5O95183 116 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 IL6P05231 212 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 GKN3PP0CG01 181 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 ZNF16P17020 682 aaPredicted RBP9.9□□□□□ -0.82
VPS28-214ENST00000531032 CDH2P19022 906 aaPredicted RBP9.9□□□□□ -0.82
VPS28-214ENST00000531032 USF1P22415 310 aaPredicted RBP9.9□□□□□ -0.82
VPS28-214ENST00000531032 PAX7P23759 505 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 EPHA3P29320 983 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 CRISP3P54108 245 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 BNIP2Q12982 314 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 TBRG1Q3YBR2 411 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 CYB5R2Q6BCY4 276 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 WBP2NLQ6ICG8 309 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 GPAT4Q86UL3 456 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 CADM2Q8N3J6 435 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 OR1K1Q8NGR3 316 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 OR52P1PQ8NH57 321 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 TLCD1Q96CP7 247 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 AURKBQ96GD4 344 aaPredicted RBP9.9□□□□□ -0.82
VPS28-214ENST00000531032 SLC38A2Q96QD8 506 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 KCNK17Q96T54 332 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 KATNB1Q9BVA0 655 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 WDR55Q9H6Y2 383 aaPredicted RBP9.9□□□□□ -0.82
VPS28-214ENST00000531032 ARGLU1Q9NWB6 273 aaPredicted RBP9.9□□□□□ -0.82
VPS28-214ENST00000531032 TMEM45AQ9NWC5 275 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms