RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 LYRM4Q9HD34 91 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 NEUROD4Q9HD90 331 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SDHAF2Q9NX18 166 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ASIC5Q9NY37 505 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 B3GNT2Q9NY97 397 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 PTGFRNQ9P2B2 879 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 COPS7AQ9UBW8 275 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 MAPRE3Q9UPY8 281 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CFAP47Q6ZTR5 3102 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 C2orf72A6NCS6 295 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 STMND1H3BQB6 276 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 GNB5O14775 395 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 EMC8O43402 210 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CTNSO60931 367 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 PPM1BO75688 479 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SCELO95171 688 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 NUDT14O95848 222 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 C1QBP02746 253 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SMIM10L1P0DMW3 83 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ANXA3P12429 323 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 POU3F2P20265 443 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CDK6Q00534 326 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ZFP36L1Q07352 338 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 HSD17B12Q53GQ0 312 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 OR5M10Q6IEU7 315 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 C6orf15Q6UXA7 325 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 AQP11Q8NBQ7 271 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 MOSPD2Q8NHP6 518 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SMIM10Q96HG1 83 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CCDC115Q96NT0 180 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 DDOQ99489 341 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 C7orf50Q9BRJ6 194 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ARL6Q9H0F7 186 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 TMEM138Q9NPI0 162 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ENAMQ9NRM1 1142 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SAMD4AQ9UPU9 718 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 DMXL2Q8TDJ6 3036 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 MED13Q9UHV7 2174 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 GXYLT2A0PJZ3 443 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 CDK1P06493 297 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 GIFP27352 417 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 FOLR3P41439 243 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 CENPAP49450 140 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 NUBP1P53384 320 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 FGL1Q08830 312 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 ZNF169Q14929 603 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 MANEAQ5SRI9 462 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SFRP5Q5T4F7 317 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SHEQ5VZ18 495 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 ATRAIDQ6UW56 229 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 TIPARPQ7Z3E1 657 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 CCDC190Q86UF4 302 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 LINC00518Q8N0U6 118 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 STPG2Q8N412 459 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SIRT6Q8N6T7 355 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 C11orf65Q8NCR3 313 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 GCDHQ92947 438 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 DUS3LQ96G46 650 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 TMEM19Q96HH6 336 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 LPAR4Q99677 370 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 CPPED1Q9BRF8 314 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SRRQ9GZT4 340 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SEC14L3Q9UDX4 400 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 DIMT1Q9UNQ2 313 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 DTX4Q9Y2E6 619 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SSUH2Q9Y2M2 353 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 BOD1L1Q8NFC6 3051 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 C9orf172C9J069 976 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 G3V3Y1 287 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 H0YIG0 161 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 TRIM77I1YAP6 450 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 AKAP8O43823 692 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 ENTPD6O75354 484 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 HPRP00739 348 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 APEHP13798 732 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 RHCEP18577 417 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 TRA2BP62995 288 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 IL11RAQ14626 422 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 PAN3Q58A45 887 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 FAM74A1Q5RGS3 127 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SLC25A25Q6KCM7 469 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 HAGHLQ6PII5 290 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 ZNF595Q8IYB9 648 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SAMD12Q8N8I0 201 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 OR11H4Q8NGC9 324 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 BBS10Q8TAM1 723 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 ADAMTS14Q8WXS8 1223 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 FCGR1BQ92637 280 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 TAAR9Q96RI9 348 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 MICU1Q9BPX6 476 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 PRR14Q9BWN1 585 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 JAM3Q9BX67 310 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 MKKSQ9NPJ1 570 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 SLC52A3Q9NQ40 469 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 DCAF13Q9NV06 445 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 FBXO34Q9NWN3 711 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 BTNL2Q9UIR0 455 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 LAMA5O15230 3695 aa7.97□□□□□ -1.13
LIMCH1-209ENST00000509277 A0A0A6YYJ9 748 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms