RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TNFRSF11BO00300 401 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 CCL21O00585 134 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 HNRNPRO43390 633 aaKnown RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 DNPH1O43598 174 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 RRP9O43818 475 aaKnown RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 EIF1BO60739 113 aaKnown RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 FKBP6O75344 327 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 LYPD3O95274 346 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 HIST1H2ABP04908 130 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 STSP08842 583 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 FCGR2AP12318 317 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 FPR1P21462 350 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 ENPP1P22413 925 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 RRM2P31350 389 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 IFNGR2P38484 337 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 CA7P43166 264 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 MAGEA2P43356 314 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 NUP107P57740 925 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 MFSD13AQ14CX5 517 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 PON3Q15166 354 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 OR7A5Q15622 319 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 CTU2Q2VPK5 515 aaKnown RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 ACSF3Q4G176 576 aaPredicted RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 EMC4Q5J8M3 183 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 C1QL3Q5VWW1 255 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 NSUN5P2Q63ZY6 315 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 OR2T5Q6IEZ7 315 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 ZFP1Q6P2D0 407 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 RPTNQ6XPR3 784 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 C3P1Q6ZMU1 363 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 HIST3H2AQ7L7L0 130 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 TSPYL5Q86VY4 417 aaPredicted RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 MCEMP1Q8IX19 187 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 PAPD5Q8NDF8 572 aaKnown RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 OR2T29Q8NH02 315 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 MFSD8Q8NHS3 518 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 TMEM255BQ8WV15 326 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 ACOT11Q8WXI4 607 aaPredicted RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 STMN2Q93045 179 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 HIST1H2ACQ93077 130 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 KTI12Q96EK9 354 aaPredicted RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 DNAJA3Q96EY1 480 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 ZNF845Q96IR2 970 aaPredicted RBP9.23□□□□□ -0.93
SKA1-204ENST00000488454 ADGRG7Q96K78 797 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 ARL5BQ96KC2 179 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 VKORC1Q9BQB6 163 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 PRSS27Q9BQR3 290 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 ASPNQ9BXN1 380 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 REEP1Q9H902 201 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 ZNF175Q9Y473 711 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 FAM208BQ5VWN6 2430 aa9.23□□□□□ -0.93
SKA1-204ENST00000488454 IGKV1D-42A0A075B6H8 117 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 CD8B2A6NJW9 211 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 LIPT2A6NK58 231 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 SLC22A20A6NK97 555 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 KPNA4O00629 521 aaPredicted RBP9.22□□□□□ -0.93
SKA1-204ENST00000488454 NPIPB7O75200 414 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 PRSS23O95084 383 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 OR6A2O95222 327 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 MT-ATP6P00846 226 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 IMPDH2P12268 514 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 FCGR1AP12314 374 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 PTNP21246 168 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 CBLP22681 906 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 FASP25445 335 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 ARHGDIAP52565 204 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 PER3P56645 1201 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 EGR4Q05215 589 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 PMPCAQ10713 525 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 IQCCQ4KMZ1 466 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 FAM69AQ5T7M9 428 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 MTFR2Q6P444 385 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 PODNL1Q6PEZ8 512 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 WDR88Q6ZMY6 472 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 MBOAT2Q6ZWT7 520 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 TSEN54Q7Z6J9 526 aaKnown RBP9.22□□□□□ -0.93
SKA1-204ENST00000488454 SYT9Q86SS6 491 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 SLC43A2Q8N370 569 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 LINC00471Q8N535 108 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 OR6S1Q8NH40 331 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 TAAR8Q969N4 342 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 SLCO4A1Q96BD0 722 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 SGTBQ96EQ0 304 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 DUS3LQ96G46 650 aaKnown RBP9.22□□□□□ -0.93
SKA1-204ENST00000488454 ALPK1Q96QP1 1244 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 TM9SF2Q99805 663 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 DENND2DQ9H6A0 471 aaPredicted RBP9.22□□□□□ -0.93
SKA1-204ENST00000488454 ARMC1Q9NVT9 282 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 MEMO1Q9Y316 297 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 SAMHD1Q9Y3Z3 626 aaKnown RBP9.22□□□□□ -0.93
SKA1-204ENST00000488454 HEATR5AQ86XA9 2040 aa9.22□□□□□ -0.93
SKA1-204ENST00000488454 PCNX3Q9H6A9 2034 aa9.21□□□□□ -0.93
SKA1-204ENST00000488454 A0A087WUU8 490 aa9.21□□□□□ -0.94
SKA1-204ENST00000488454 CLOCKO15516 846 aa9.21□□□□□ -0.94
SKA1-204ENST00000488454 LRRTM2O43300 516 aa9.21□□□□□ -0.94
SKA1-204ENST00000488454 DEAF1O75398 565 aaPredicted RBP9.21□□□□□ -0.94
SKA1-204ENST00000488454 E2F6O75461 281 aa9.21□□□□□ -0.94
SKA1-204ENST00000488454 TIPRLO75663 272 aa9.21□□□□□ -0.94
SKA1-204ENST00000488454 CH25HO95992 272 aa9.21□□□□□ -0.94
SKA1-204ENST00000488454 PLGP00747 810 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms