RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 WARS2Q9UGM6 360 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 C3orf18Q9UK00 162 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 KIAA1257Q9ULG3 409 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 EIF3LQ9Y262 564 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 ITM2BQ9Y287 266 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 MTF2Q9Y483 593 aaPredicted RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 PEX16Q9Y5Y5 336 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 IGSF9BQ9UPX0 1349 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 LOC390937A0A1W2PQ73 354 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 TCRBV3S1A0A5B6 114 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 DHRS12A0PJE2 317 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 FAM149AA5PLN7 773 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 OR5H15A6NDH6 313 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 H0YIG0 161 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 ZNF646O15015 1829 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 MAGEB3O15480 346 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 SIPA1L1O43166 1804 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 SYT7O43581 403 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 SULT1B1O43704 296 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 PLIN3O60664 434 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 CST8O60676 142 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 NME6O75414 186 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 GLCEO94923 617 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 MELTFP08582 738 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 ODC1P11926 461 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 PGAM1P18669 254 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 TCN1P20061 433 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 PRKACBP22694 351 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 CDKN2BP42772 138 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 MAGEB1P43366 347 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 RPS5P46782 204 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 GNPDA1P46926 289 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 MARCKSL1P49006 195 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 PEX3P56589 373 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 PSME3P61289 254 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 RPS27AP62979 156 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 OTUD4Q01804 1114 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 MFGE8Q08431 387 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 KLHL12Q53G59 568 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 RSBN1Q5VWQ0 802 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 NANOGP8Q6NSW7 305 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 APOBEC3HQ6NTF7 200 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 LINC00696Q6ZRV3 163 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 TRIM69Q86WT6 500 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 GRAMD2AQ8IUY3 354 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 PSTKQ8IV42 348 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 SLC22A9Q8IVM8 553 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 ZNF781Q8N8C0 355 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 RTL3Q8N8U3 475 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 TRPV3Q8NET8 790 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 SPATA18Q8TC71 538 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 MCOLN3Q8TDD5 553 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 CAPSLQ8WWF8 208 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 RORBQ92753 470 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 CIDECQ96AQ7 238 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 TUBGCP3Q96CW5 907 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 BTN2A3PQ96KV6 586 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 MTG1Q9BT17 334 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 CHID1Q9BWS9 393 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 FTHL17Q9BXU8 183 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 LHX5Q9H2C1 402 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 COQ10BQ9H8M1 238 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 COG4Q9H9E3 785 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 NEK6Q9HC98 313 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 RPRD1BQ9NQG5 326 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 POLE3Q9NRF9 147 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 ACTR3BQ9P1U1 418 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 RCOR3Q9P2K3 495 aaPredicted RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 ZMAT5Q9UDW3 170 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 KCNN3Q9UGI6 736 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 ENOPH1Q9UHY7 261 aa4.59□□□□□ -1.67
USP40-213ENST00000483216 MRPL11Q9Y3B7 192 aaKnown RBP4.59□□□□□ -1.67
USP40-213ENST00000483216 HCFC1P51610 2035 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 SCN9AQ15858 1988 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ARFGEF1Q9Y6D6 1849 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 GOLGB1Q14789 3259 aaKnown RBP4.58□□□□□ -1.68
USP40-213ENST00000483216 LOC100653049A0A140TA62 436 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 A0A1B0GTH9 108 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ATP6AP2A0A1C7CYW4 349 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 MEI4A8MW99 385 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 H7C0C1 242 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 UBXN8O00124 270 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 SLC33A1O00400 549 aaPredicted RBP4.58□□□□□ -1.68
USP40-213ENST00000483216 HAT1O14929 419 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 CFLARO15519 480 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 B4GAT1O43505 415 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 PRPSAP2O60256 369 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 NOS1APO75052 506 aaPredicted RBP4.58□□□□□ -1.68
USP40-213ENST00000483216 UGT2B11O75310 529 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 UPK1BO75841 260 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 KRT34O76011 436 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ASS1P00966 412 aaKnown RBP4.58□□□□□ -1.68
USP40-213ENST00000483216 HCKP08631 526 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 HSD17B1P14061 328 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 F8A1P23610 371 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 PSMA2P25787 234 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 CA8P35219 290 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 UGT2B10P36537 528 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 SLC26A3P40879 764 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 RPS9P46781 194 aaKnown RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms