RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ADRM1Q16186 407 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 OTUD3Q5T2D3 398 aaPredicted RBP12.39□□□□□ -0.43
UPF3A-204ENST00000475218 PRAMEF8Q5VWM4 474 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 PRAMEF7Q5VXH5 474 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 CLEC9AQ6UXN8 241 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 CASP12Q6UXS9 341 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 P2RY8Q86VZ1 359 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 SMAP2Q8WU79 429 aaPredicted RBP12.39□□□□□ -0.43
UPF3A-204ENST00000475218 TMEM45BQ96B21 275 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 WFDC6Q9BQY6 131 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 NGBQ9NPG2 151 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 THUMPD1Q9NXG2 353 aaKnown RBP12.39□□□□□ -0.43
UPF3A-204ENST00000475218 TAS2R16Q9NYV7 291 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 ANK3Q12955 4377 aaKnown RBP12.39□□□□□ -0.43
UPF3A-204ENST00000475218 ABCD4O14678 606 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 TPST1O60507 370 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 TMCC2O75069 709 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 FZD7O75084 574 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 UQCRBP14927 111 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 CXCR1P25024 350 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 HTR2AP28223 471 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 RPS4XP62701 263 aaKnown RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 LGALS3BPQ08380 585 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 LARS2Q15031 903 aaKnown RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 ZNF311Q5JNZ3 666 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 C9orf135Q5VTT2 229 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 DLEU7Q6UYE1 221 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 GOLGA6L1Q8N7Z2 621 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 OR9K2Q8NGE7 335 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 NFKBIDQ8NI38 313 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 BBS10Q8TAM1 723 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 NAA11Q9BSU3 229 aaPredicted RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 CXorf56Q9H5V9 222 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 SEC14L4Q9UDX3 406 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 SLC9A8Q9Y2E8 581 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 A8MVM7 634 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 SMAD7O15105 426 aaKnown RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 NDUFS7O75251 213 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 GPIP06744 558 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 PTNP21246 168 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 CDKN1AP38936 164 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 ATP4BP51164 291 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 ATP5J2P56134 94 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 STX1BP61266 288 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 KRTAP1-1Q07627 177 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 C1orf140Q5VVS0 124 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 B3GLCTQ6Y288 498 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 LINGO2Q7L985 606 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 DTX2Q86UW9 622 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 CKAP2Q8WWK9 683 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 MUCL1Q96DR8 90 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 THOC1Q96FV9 657 aaKnown RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 CPPED1Q9BRF8 314 aaPredicted RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 BDH2Q9BUT1 245 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 TRAF4Q9BUZ4 470 aaPredicted RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 SF3B5Q9BWJ5 86 aaKnown RBP12.38□□□□□ -0.43
UPF3A-204ENST00000475218 PRR14Q9BWN1 585 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 ZNF232Q9UNY5 417 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 IFT52Q9Y366 437 aa12.38□□□□□ -0.43
UPF3A-204ENST00000475218 CR1P17927 2039 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 IGKV1D-42A0A075B6H8 117 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 CCT8L1PA6NM43 557 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 E7EQL1 145 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 ETS2P15036 469 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 GPX2P18283 190 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 ZNF83P51522 516 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 TNK1Q13470 666 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 ZSWIM7Q19AV6 140 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 AGKQ53H12 422 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 C6orf89Q6UWU4 347 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 DNM1P46Q6ZS02 220 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 RETREG3Q86VR2 466 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 EPHX4Q8IUS5 362 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 SLC35B4Q969S0 331 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 KTI12Q96EK9 354 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-204ENST00000475218 ADPRHL2Q9NX46 363 aa12.37□□□□□ -0.43
UPF3A-204ENST00000475218 CIB4A0PJX0 185 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 TPST2O60704 377 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 SASH3O75995 380 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 IGHV4-39P01824 125 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 CD40P25942 277 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 CDK6Q00534 326 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 GCNT6Q5T4J0 391 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 CREB3L2Q70SY1 520 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 STON2Q8WXE9 905 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 C1QTNF6Q9BXI9 259 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 SLC17A5Q9NRA2 495 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 INTS9Q9NV88 658 aaKnown RBP12.36□□□□□ -0.43
UPF3A-204ENST00000475218 TMEM45AQ9NWC5 275 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 CISD1Q9NZ45 108 aaKnown RBP12.36□□□□□ -0.43
UPF3A-204ENST00000475218 DCTN4Q9UJW0 460 aa12.36□□□□□ -0.43
UPF3A-204ENST00000475218 GDF2Q9UK05 429 aaPredicted RBP12.36□□□□□ -0.43
UPF3A-204ENST00000475218 A0A1W2PP18 115 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 NCF2P19878 526 aaPredicted RBP12.35□□□□□ -0.43
UPF3A-204ENST00000475218 PRKAR1BP31321 381 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 SELENOPP49908 381 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 CDH11P55287 796 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 COPZ1P61923 177 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 SELPLGQ14242 412 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 SQLEQ14534 574 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms