RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 CADM2Q8N3J6 435 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 TMEM99Q8N816 258 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 GLB1L3Q8NCI6 653 aaPredicted RBP13.47□□□□□ -0.25
SKA3-204ENST00000462482 PNPT1Q8TCS8 783 aaKnown RBP13.47□□□□□ -0.25
SKA3-204ENST00000462482 AURKBQ96GD4 344 aaPredicted RBP13.47□□□□□ -0.25
SKA3-204ENST00000462482 PIMREGQ9BSJ6 248 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 ADAM19Q9H013 955 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 MOV10Q9HCE1 1003 aaKnown RBP13.47□□□□□ -0.25
SKA3-204ENST00000462482 AIG1Q9NVV5 245 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 ZNF232Q9UNY5 417 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 MOKQ9UQ07 419 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 HEATR5AQ86XA9 2040 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 A0A096LNT2 108 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 A0A096LPI6 279 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 ZC3H12DA2A288 527 aaKnown RBP13.46□□□□□ -0.25
SKA3-204ENST00000462482 LIPT2A6NK58 231 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 AQP7P3A6NL99 342 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 TRPC5OSA6NMA1 111 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 A8MVM7 634 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 VSTM5A8MXK1 200 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 NDUFS8O00217 210 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 RFXANKO14593 260 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 KLF11O14901 512 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 PHF1O43189 567 aaPredicted RBP13.46□□□□□ -0.25
SKA3-204ENST00000462482 ANP32DO95626 131 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 CRYAAP02489 173 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 GSNP06396 782 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 GTF2E2P29084 291 aaKnown RBP13.46□□□□□ -0.25
SKA3-204ENST00000462482 CRISP3P54108 245 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 LARS2Q15031 903 aaKnown RBP13.46□□□□□ -0.25
SKA3-204ENST00000462482 CARTPTQ16568 116 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 HHATQ5VTY9 493 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 SLC46A3Q7Z3Q1 461 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 PHC2Q8IXK0 858 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 OR52P1PQ8NH57 321 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 SORT1Q99523 831 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 C20orf27Q9GZN8 174 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 MYOZ1Q9NP98 299 aaPredicted RBP13.46□□□□□ -0.25
SKA3-204ENST00000462482 PNPOQ9NVS9 261 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 ADPRHL2Q9NX46 363 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 HAO1Q9UJM8 370 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 FBXO9Q9UK97 447 aaPredicted RBP13.46□□□□□ -0.25
SKA3-204ENST00000462482 KCNS2Q9ULS6 477 aa13.46□□□□□ -0.25
SKA3-204ENST00000462482 LMX1BO60663 402 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 ZNF16P17020 682 aaPredicted RBP13.45□□□□□ -0.26
SKA3-204ENST00000462482 HNF1AP20823 631 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 RPS4Y1P22090 263 aaKnown RBP13.45□□□□□ -0.26
SKA3-204ENST00000462482 CRATP43155 626 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 SLC25A3Q00325 362 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 PLAURQ03405 335 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 GGTLC2Q14390 218 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 HIKESHIQ53FT3 197 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 PRAMEF8Q5VWM4 474 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 PRAMEF7Q5VXH5 474 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 NXNQ6DKJ4 435 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 FAM166AQ6J272 317 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 WDR93Q6P2C0 686 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 CROCCP2Q86T23 111 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 TEX37Q96LM6 180 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 ZNF385AQ96PM9 386 aaKnown RBP13.45□□□□□ -0.26
SKA3-204ENST00000462482 ZNF317Q96PQ6 595 aaPredicted RBP13.45□□□□□ -0.26
SKA3-204ENST00000462482 SLC38A2Q96QD8 506 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 VRK1Q99986 396 aaPredicted RBP13.45□□□□□ -0.26
SKA3-204ENST00000462482 RMND5AQ9H871 391 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 THUMPD1Q9NXG2 353 aaKnown RBP13.45□□□□□ -0.26
SKA3-204ENST00000462482 RASD1Q9Y272 281 aa13.45□□□□□ -0.26
SKA3-204ENST00000462482 SONP18583 2426 aaKnown RBP13.44□□□□□ -0.26
SKA3-204ENST00000462482 CDHR4A6H8M9 788 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 AHSA1O95433 338 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 IL6P05231 212 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 ERCC1P07992 297 aaPredicted RBP13.44□□□□□ -0.26
SKA3-204ENST00000462482 ALDOCP09972 364 aaKnown RBP13.44□□□□□ -0.26
SKA3-204ENST00000462482 GKN3PP0CG01 181 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 IGHV4-31P0DP07 118 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 SERPINF1P36955 418 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 CDKN2CP42773 168 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 BST1Q10588 318 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 TBRG1Q3YBR2 411 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 IQCCQ4KMZ1 466 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 COX20Q5RI15 118 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 C1orf140Q5VVS0 124 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 MREGQ8N565 214 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 ZIC4Q8N9L1 334 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 ZNF540Q8NDQ6 660 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 NANOS1Q8WY41 292 aaKnown RBP13.44□□□□□ -0.26
SKA3-204ENST00000462482 KATNB1Q9BVA0 655 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 RLIMQ9NVW2 624 aa13.44□□□□□ -0.26
SKA3-204ENST00000462482 LOC100289279A0A1B0GTE1 492 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 B9A039 149 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 SLCO1B7G3V0H7 640 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 SDHDO14521 159 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 HDAC3O15379 428 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 SLC22A3O75751 556 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 LGI1O95970 557 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 BCHEP06276 602 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 TFPTP0C1Z6 253 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 APEHP13798 732 aaKnown RBP13.43□□□□□ -0.26
SKA3-204ENST00000462482 IDO1P14902 403 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 SRD5A1P18405 259 aa13.43□□□□□ -0.26
SKA3-204ENST00000462482 SH3BGRP55822 239 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms