RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ZNF136P52737 540 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 KLHL22Q53GT1 634 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SLC30A6Q6NXT4 461 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 TMEM81Q6P7N7 255 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 C16orf87Q6PH81 154 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 Q6ZS92 163 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 IQCF1Q8N6M8 205 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF614Q8N883 585 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 OR6Q1Q8NGQ2 317 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 TMEM163Q8TC26 289 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 RNF138Q8WVD3 245 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 RPL3LQ92901 407 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 MGLLQ99685 303 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 MND1Q9BWT6 205 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 GALNT9Q9HCQ5 603 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 CCDC59Q9P031 241 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ERGIC3Q9Y282 383 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 CPAMD8Q8IZJ3 1885 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 TRAPPC13A5PLN9 417 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SERINC4A6NH21 518 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 CCRL2O00421 344 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 KLF4O43474 513 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 NDUFB5O43674 189 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 TLX2O43763 284 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SCO2O43819 266 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 NME2P1O60361 137 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SNX4O95219 450 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 NME2P22392 152 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 GAS1P54826 345 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 GPR85P60893 370 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 MED22Q15528 200 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SNAPC1Q16533 368 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ZSWIM7Q19AV6 140 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SYT14P1Q58G82 188 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ACSM5Q6NUN0 579 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 GALNTL5Q7Z4T8 443 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SULF2Q8IWU5 870 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 RNF113BQ8IZP6 322 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 GATSQ8NAP1 163 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 PROKR2Q8NFJ6 384 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 DUSP19Q8WTR2 217 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 OIT3Q8WWZ8 545 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 NTNG2Q96CW9 530 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SCMH1Q96GD3 660 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 FAM46AQ96IP4 442 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF582Q96NG8 517 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 PRR14Q9BWN1 585 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 TAPBPLQ9BX59 468 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SLIRPQ9GZT3 109 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SDHAF3Q9NRP4 125 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 DEPPQ9NTK1 212 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 MED17Q9NVC6 651 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 TESQ9UGI8 421 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 DIMT1Q9UNQ2 313 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 KLF13Q9Y2Y9 288 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 LSM2Q9Y333 95 aaKnown RBP12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ITPR1Q14643 2758 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 PIEZO2Q9H5I5 2752 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 A0A1W2PQD3 144 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 KDM4EB2RXH2 506 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-204ENST00000409441 KLRC4-KLRK1H3BQV0 150 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 ADAM10O14672 748 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 PRODHO43272 600 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 RAB36O95755 333 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 THY1P04216 161 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 SCG5P05408 212 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 ADRA2AP08913 450 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 ENDOUP21128 410 aaKnown RBP12.18□□□□□ -0.46
LIMS1-204ENST00000409441 DNASE1L1P49184 302 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF169Q14929 603 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-204ENST00000409441 PLEKHN1Q494U1 663 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-204ENST00000409441 OR5M10Q6IEU7 315 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 GDPGP1Q6ZNW5 385 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 Q6ZNX1 250 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 NKAIN4Q8IVV8 208 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 NANOGP1Q8N7R0 232 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 TMEM178AQ8NBL3 297 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 PHOSPHO1Q8TCT1 267 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 OR5M11Q96RB7 305 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 PLA2G12AQ9BZM1 189 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 SLC25A18Q9H1K4 315 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 MMP27Q9H306 513 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 EGLN3Q9H6Z9 239 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 FGF20Q9NP95 211 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-204ENST00000409441 IL20Q9NYY1 176 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 PCDHGB6Q9Y5F9 930 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 PMF1-BGLAPU3KQ54 211 aa12.18□□□□□ -0.46
LIMS1-204ENST00000409441 TNRC6AQ8NDV7 1962 aaKnown RBP12.17□□□□□ -0.46
LIMS1-204ENST00000409441 A0A0G2JMM0 328 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 A0A1W2PPB8 328 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 A0A1W2PRS3 328 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 CDHR4A6H8M9 788 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 METTL15A6NJ78 407 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 KIR3DP1A8MWS1 328 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 GTPBP1O00178 669 aaKnown RBP12.17□□□□□ -0.46
LIMS1-204ENST00000409441 HSMCR30P0CW71 290 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 ADH7P40394 386 aa12.17□□□□□ -0.46
LIMS1-204ENST00000409441 LSM11P83369 360 aaKnown RBP eCLIP12.17□□□□□ -0.46
LIMS1-204ENST00000409441 C17orf67Q0P5P2 114 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms