RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 FOXK2Q01167 660 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 PLCXD3Q63HM9 321 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 GTPBP8Q8N3Z3 284 aaPredicted RBP16.86■□□□□ 0.29
COL18A1-204ENST00000400337 DCUN1D4Q92564 292 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 RSC1A1Q92681 617 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 A0A1B0GTW7 788 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 SOCS6O14544 535 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 EPHA1P21709 976 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 CD27P26842 260 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 GPR157Q5UAW9 335 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 NXNL2Q5VZ03 156 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 ACBD4Q8NC06 268 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 OR1J4Q8NGS1 313 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 OLIG1Q8TAK6 271 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 NHSL1Q5SYE7 1610 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 POM121BA6NF01 834 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 CAMK2DQ13557 499 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 TSSK4Q6SA08 328 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 COX15Q7KZN9 410 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 ZNF566Q969W8 418 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 COQ10AQ96MF6 247 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 ZNF578Q96N58 590 aaPredicted RBP16.86■□□□□ 0.29
COL18A1-204ENST00000400337 GAREM1Q9H706 876 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 TBX21Q9UL17 535 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 ATG12O94817 140 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 SPDEFO95238 335 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 TP53P04637 393 aaPredicted RBP16.86■□□□□ 0.29
COL18A1-204ENST00000400337 OR1D5P58170 312 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 PRICKLE2Q7Z3G6 844 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 GHSRQ92847 366 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 CTRCQ99895 268 aa16.86■□□□□ 0.29
COL18A1-204ENST00000400337 TMED7-TICAM2A0A0A6YYA0 188 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 TNFRSF10CO14798 259 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 MRPL33O75394 65 aaKnown RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 OR2T7P0C7T2 308 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 ICAM2P13598 275 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 TAS2R31P59538 309 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 SIRPAP78324 504 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 PLK5Q496M5 336 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 ELP2Q6IA86 826 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 OR2T27Q8NH04 317 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 MS4A6EQ96DS6 147 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 OR5M11Q96RB7 305 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 PRRT1Q99946 306 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 CENPOQ9BU64 300 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 YARS2Q9Y2Z4 477 aaKnown RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 TMED7Q9Y3B3 224 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 A0A1B0GVG6 124 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 SLC16A6O15403 523 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 ALDOBP05062 364 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 CLDN17P56750 224 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 SEC61A1P61619 476 aaKnown RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 DPTQ07507 201 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 DUSP7Q16829 419 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 DPY19L4Q7Z388 723 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 OR13F1Q8NGS4 319 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 OR5K3A6NET4 321 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 LHX8Q68G74 356 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 ZNF767PQ75MW2 155 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 NOXA1Q86UR1 476 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 FAM83FQ8NEG4 500 aaPredicted RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 PIGCQ92535 297 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 PBX4Q9BYU1 374 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 NOX3Q9HBY0 568 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 CAMK2AQ9UQM7 478 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 TNRC6CQ9HCJ0 1690 aaKnown RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 CDHR4A6H8M9 788 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 SCG5P05408 212 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 SNRPBP14678 240 aaKnown RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 ZNF14P17017 642 aaPredicted RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 PTPN6P29350 595 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 CLDN12P56749 244 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 ZNF836Q6ZNA1 936 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 COMMD7Q86VX2 200 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 RBM45Q8IUH3 476 aaKnown RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 DNAJB11Q9UBS4 358 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 MOKQ9UQ07 419 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.85■□□□□ 0.29
COL18A1-204ENST00000400337 MMACHCQ9Y4U1 282 aa16.85■□□□□ 0.29
COL18A1-204ENST00000400337 GAAP10253 952 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 SSR4P51571 173 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 PCBD1P61457 104 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 SF3B4Q15427 424 aaKnown RBP eCLIP16.84■□□□□ 0.293e-7■■■■■ 27.8
COL18A1-204ENST00000400337 MEX3BQ6ZN04 569 aaKnown RBP16.84■□□□□ 0.29
COL18A1-204ENST00000400337 C7orf50Q9BRJ6 194 aaKnown RBP16.84■□□□□ 0.29
COL18A1-204ENST00000400337 PRDM9Q9NQV7 894 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 RCE1Q9Y256 329 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 SNX11Q9Y5W9 270 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 TRAV36DV7A0A075B6V5 113 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 SERPINE2P07093 398 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 SLC6A12P48065 614 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 C17orf67Q0P5P2 114 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 MEF2DQ14814 521 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 MISPQ8IVT2 679 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 ZNF486Q96H40 463 aaPredicted RBP16.84■□□□□ 0.29
COL18A1-204ENST00000400337 SORCS2Q96PQ0 1159 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 SPHK1Q9NYA1 384 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 EVPLQ92817 2033 aa16.84■□□□□ 0.29
COL18A1-204ENST00000400337 COL22A1Q8NFW1 1626 aaPredicted RBP16.84■□□□□ 0.29
COL18A1-204ENST00000400337 PIP5K1CO60331 668 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms