RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LIM2P55344 173 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 EXOSC7Q15024 291 aaKnown RBP17.91■□□□□ 0.46
USP48-201ENST00000308271 PEX11GQ96HA9 241 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 ARPC5LQ9BPX5 153 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 SLCO5A1Q9H2Y9 848 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 CYSLTR2Q9NS75 346 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 APBB3O95704 486 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 IFNA2P01563 188 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 ANXA7P20073 488 aaKnown RBP17.91■□□□□ 0.46
USP48-201ENST00000308271 SLC2A5P22732 501 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 AVPI1Q5T686 147 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 GPAT4Q86UL3 456 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 GRAMD2AQ8IUY3 354 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 MFSD9Q8NBP5 474 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 RNF141Q8WVD5 230 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 TIMM29Q9BSF4 260 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 A0A1B0GUH1 482 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 MPIG6BO95866 241 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 SLC6A8P48029 635 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.91■□□□□ 0.463e-7■■■□□ 14.7
USP48-201ENST00000308271 OR4K17Q8NGC6 315 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 ASB17Q8WXJ9 295 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 HOXB13Q92826 284 aaPredicted RBP17.91■□□□□ 0.46
USP48-201ENST00000308271 MARVELD1Q9BSK0 173 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 SLAMF7Q9NQ25 335 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 ADRB1P08588 477 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 NIPAL3Q6P499 406 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 OR52R1Q8NGF1 315 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 DAZLQ92904 295 aaKnown RBP17.91■□□□□ 0.46
USP48-201ENST00000308271 PNPLA2Q96AD5 504 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 SEC22AQ96IW7 307 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 ENTPD2Q9Y5L3 495 aa17.91■□□□□ 0.46
USP48-201ENST00000308271 RAD51DO75771 328 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 HMGA1P17096 107 aaKnown RBP17.9■□□□□ 0.46
USP48-201ENST00000308271 TNFRSF17Q02223 184 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 TMEM225Q6GV28 225 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 MFSD12Q6NUT3 480 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 METTL27Q8N6F8 245 aaPredicted RBP17.9■□□□□ 0.46
USP48-201ENST00000308271 OR14K1Q8NGZ2 314 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 MSRAQ9UJ68 235 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 MED16Q9Y2X0 877 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 ZNF850A8MQ14 1090 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 LUMP51884 338 aaPredicted RBP17.9■□□□□ 0.46
USP48-201ENST00000308271 BCL2A1Q16548 175 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 LPCAT3Q6P1A2 487 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 ELOVL3Q9HB03 270 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 CMC2Q9NRP2 79 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 ATG4BQ9Y4P1 393 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 FOCADQ5VW36 1801 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 MFSD13AQ14CX5 517 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 SGPP2Q8IWX5 399 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 ACBD4Q8NC06 268 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 PGAM5Q96HS1 289 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 SGPP1Q9BX95 441 aa17.9■□□□□ 0.46
USP48-201ENST00000308271 TRBV5-3A0A0A0MS03 114 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 KNG1P01042 644 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 IGHA2P01877 340 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 HBQ1P09105 142 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 CALCBP10092 127 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 TSFMP43897 325 aaKnown RBP17.89■□□□□ 0.46
USP48-201ENST00000308271 CSNK1G2P78368 415 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 ABHD17CQ6PCB6 329 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 MMP21Q8N119 569 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 ESX1Q8N693 406 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 SLC16A11Q8NCK7 471 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 SCGB1C1Q8TD33 95 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 INSM2Q96T92 566 aaPredicted RBP17.89■□□□□ 0.46
USP48-201ENST00000308271 SYT3Q9BQG1 590 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 PRRG4Q9BZD6 226 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 CBLCQ9ULV8 474 aa17.89■□□□□ 0.46
USP48-201ENST00000308271 A0A1B0GWA3 101 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 CST5P28325 142 aaPredicted RBP17.89■□□□□ 0.45
USP48-201ENST00000308271 LTB4RQ15722 352 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 PDCD1LG2Q9BQ51 273 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 IL21RQ9HBE5 538 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 SCML1Q9UN30 329 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 PRKRAO75569 313 aaKnown RBP17.89■□□□□ 0.45
USP48-201ENST00000308271 DUSP18Q8NEJ0 188 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 FNDC9Q8TBE3 224 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 NMNAT3Q96T66 252 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 PRMT8Q9NR22 394 aaPredicted RBP17.89■□□□□ 0.45
USP48-201ENST00000308271 NCDNQ9UBB6 729 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 TRIM64A6NGJ6 449 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 SNRPGP15A8MWD9 76 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 IFNA5P01569 189 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 BDKRB2P30411 391 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 SLC35D3Q5M8T2 416 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 WBP2NLQ6ICG8 309 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 GIMAP5Q96F15 307 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 JSRP1Q96MG2 331 aaPredicted RBP17.89■□□□□ 0.45
USP48-201ENST00000308271 NKX6-2Q9C056 277 aaPredicted RBP17.89■□□□□ 0.45
USP48-201ENST00000308271 HRASLSQ9HDD0 168 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 STEAP1Q9UHE8 339 aa17.89■□□□□ 0.45
USP48-201ENST00000308271 LSM5Q9Y4Y9 91 aaKnown RBP17.89■□□□□ 0.45
USP48-201ENST00000308271 SURF4O15260 269 aa17.88■□□□□ 0.45
USP48-201ENST00000308271 TXNL1O43396 289 aa17.88■□□□□ 0.45
USP48-201ENST00000308271 SSX5O60225 188 aa17.88■□□□□ 0.45
USP48-201ENST00000308271 S100PP25815 95 aa17.88■□□□□ 0.45
USP48-201ENST00000308271 ALKBH1Q13686 389 aaKnown RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms