RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 RPS27AP62979 156 aaKnown RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 UBA52P62987 128 aaKnown RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 SIRPAP78324 504 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 B4GALNT1Q00973 533 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 PUS10Q3MIT2 529 aaKnown RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 CYHR1Q6ZMK1 362 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 NLRP8Q86W28 1048 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 OR52N1Q8NH53 320 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 ZNF417Q8TAU3 575 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 CHTF18Q8WVB6 975 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 RAB40AQ8WXH6 277 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 FAM3CQ92520 227 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 NEURL3Q96EH8 262 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 UBQLN3Q9H347 655 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 MCCC2Q9HCC0 563 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 APMAPQ9HDC9 416 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 NOX4Q9NPH5 578 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 NIT2Q9NQR4 276 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 EXO1Q9UQ84 846 aaKnown RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 KCNIP3Q9Y2W7 256 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 A0A0B4J203 849 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 GAPDHSO14556 408 aaPredicted RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 PRKRAO75569 313 aaKnown RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 HTR1FP30939 366 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 MNX1P50219 401 aaPredicted RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 RIDAP52758 137 aaKnown RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 SSX1Q16384 188 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 C14orf28Q4W4Y0 310 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 TMEM88Q6PEY1 159 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 RAB11FIP2Q7L804 512 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 CALHM3Q86XJ0 350 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 BPIFB2Q8N4F0 458 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 METTL27Q8N6F8 245 aaPredicted RBP14.25□□□□□ -0.13
SHH-201ENST00000297261 FAM83CQ9BQN1 747 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 SMIM3Q9BZL3 60 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 ZNF576Q9H609 170 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 COPS7AQ9UBW8 275 aa14.25□□□□□ -0.13
SHH-201ENST00000297261 OR6C65A6NJZ3 312 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 H7C417 338 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 ZNF208O43345 1280 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 OIP5O43482 229 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 H2BFMP0C1H6 154 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 NRG3P56975 720 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 EIF2B1Q14232 305 aaKnown RBP14.24□□□□□ -0.13
SHH-201ENST00000297261 PLEKHN1Q494U1 663 aaPredicted RBP14.24□□□□□ -0.13
SHH-201ENST00000297261 CHRFAM7AQ494W8 412 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 SLC29A4Q7RTT9 530 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 ARL14Q8N4G2 192 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 KIAA1958Q8N8K9 716 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 DVL3Q92997 716 aaPredicted RBP14.24□□□□□ -0.13
SHH-201ENST00000297261 MICU1Q9BPX6 476 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 CA5BQ9Y2D0 317 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 MED16Q9Y2X0 877 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 TMEM82A0PJX8 343 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 ZNF250P15622 560 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 TEAD1P28347 426 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 PPT1P50897 306 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 FAAP20Q6NZ36 180 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 TMUB2Q71RG4 321 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 RDH10Q8IZV5 341 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 DNAAF1Q8NEP3 725 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 OR10R2Q8NGX6 335 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 MS4A4EQ96PG1 132 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 ZNF559Q9BR84 538 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.24□□□□□ -0.13
SHH-201ENST00000297261 FBRSQ9HAH7 460 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 IL21RQ9HBE5 538 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 KCNJ16Q9NPI9 418 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 CA14Q9ULX7 337 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 MGAMO43451 1857 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 HRO43593 1189 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 CYCSP99999 105 aaKnown RBP14.24□□□□□ -0.13
SHH-201ENST00000297261 CRIPAKQ8N1N5 446 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 LSMEM1Q8N8F7 131 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 OR52I2Q8NH67 350 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 TMEM255BQ8WV15 326 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 HDAC8Q9BY41 377 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 TPSD1Q9BZJ3 242 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 TM7SF3Q9NS93 570 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 ACOXLQ9NUZ1 547 aa14.24□□□□□ -0.13
SHH-201ENST00000297261 A0A0B4J2A0 478 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 E9PI62 339 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 TLX3O43711 291 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 SEMA4FO95754 770 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 GP1BBP13224 206 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 SEC61A1P61619 476 aaKnown RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 SHC2P98077 582 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 GBX1Q14549 363 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 PXKQ7Z7A4 578 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 BPHLQ86WA6 291 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 OR13C3Q8NGS6 347 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 FOXRED1Q96CU9 486 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 KLHDC7BQ96G42 594 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 DNTTIP1Q9H147 329 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 ZMAT3Q9HA38 289 aaKnown RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 SHPKQ9UHJ6 478 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 SEC16AO15027 2179 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 FOXE1O00358 373 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 MOSPD3O75425 235 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 MAOAP21397 527 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms