RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 ANKRD13DQ6ZTN6 518 aa11.86□□□□□ -0.51
PDLIM5-223ENST00000627587 LINS1Q8NG48 757 aa11.86□□□□□ -0.51
PDLIM5-223ENST00000627587 CNKSR1Q969H4 720 aa11.86□□□□□ -0.51
PDLIM5-223ENST00000627587 DCTPP1Q9H773 170 aa11.86□□□□□ -0.51
PDLIM5-223ENST00000627587 LRRFIP2Q9Y608 721 aaKnown RBP11.86□□□□□ -0.51
PDLIM5-223ENST00000627587 UTYO14607 1347 aa11.86□□□□□ -0.51
PDLIM5-223ENST00000627587 ANKRD36CQ5JPF3 1778 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 CARMIL3Q8ND23 1372 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 NUP98P52948 1817 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 ALDH1L1O75891 902 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 MYCNP04198 464 aaPredicted RBP11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 ZNF622Q969S3 477 aaKnown RBP eCLIP11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 SETDB2Q96T68 719 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 METTL22Q9BUU2 404 aaPredicted RBP11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 UBTFL1P0CB47 393 aaPredicted RBP11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 TBC1D9BQ66K14 1250 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 RIC3Q7Z5B4 369 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 GCC1Q96CN9 775 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 KAZALD1Q96I82 304 aa11.85□□□□□ -0.51
PDLIM5-223ENST00000627587 LTBP3Q9NS15 1303 aa11.84□□□□□ -0.51
PDLIM5-223ENST00000627587 NEURL1BA8MQ27 555 aa11.84□□□□□ -0.51
PDLIM5-223ENST00000627587 NFKBIEO00221 500 aa11.84□□□□□ -0.51
PDLIM5-223ENST00000627587 ST5P78524 1137 aa11.84□□□□□ -0.51
PDLIM5-223ENST00000627587 STYK1Q6J9G0 422 aa11.84□□□□□ -0.51
PDLIM5-223ENST00000627587 PLBD2Q8NHP8 589 aa11.84□□□□□ -0.51
PDLIM5-223ENST00000627587 CCDC88AQ3V6T2 1871 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 RGL2O15211 777 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 PRELPP51888 382 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 HTRA3P83110 453 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 ATP8B2P98198 1209 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 PRR5LQ6MZQ0 368 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 CLEC4GQ6UXB4 293 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 CHD1LQ86WJ1 897 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 MYD88Q99836 296 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 TBC1D2BQ9UPU7 963 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 RBM19Q9Y4C8 960 aaKnown RBP11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 NPHP1O15259 732 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 POLA2Q14181 598 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 C8orf34Q49A92 452 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 ERFEQ4G0M1 354 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 CNBD1Q8NA66 436 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 MASTLQ96GX5 879 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 LNPKQ9C0E8 428 aa11.83□□□□□ -0.52
PDLIM5-223ENST00000627587 GRM8O00222 908 aa11.82□□□□□ -0.52
PDLIM5-223ENST00000627587 C21orf2O43822 256 aa11.82□□□□□ -0.52
PDLIM5-223ENST00000627587 GCKRQ14397 625 aa11.82□□□□□ -0.52
PDLIM5-223ENST00000627587 SSH3Q8TE77 659 aa11.82□□□□□ -0.52
PDLIM5-223ENST00000627587 BACH2Q9BYV9 841 aa11.82□□□□□ -0.52
PDLIM5-223ENST00000627587 TAOK3Q9H2K8 898 aa11.82□□□□□ -0.52
PDLIM5-223ENST00000627587 ZNF330Q9Y3S2 320 aaPredicted RBP11.82□□□□□ -0.52
PDLIM5-223ENST00000627587 DICER1Q9UPY3 1922 aaKnown RBP11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 HMMRO75330 724 aa11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 CAMTA2O94983 1202 aa11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 NEXNQ0ZGT2 675 aa11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 MTX1Q13505 466 aa11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 ANKRD45Q5TZF3 282 aa11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 ZNF652Q9Y2D9 606 aa11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 BCORQ6W2J9 1755 aa11.81□□□□□ -0.52
PDLIM5-223ENST00000627587 POTECB2RU33 542 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 ATP5J2-PTCD1G3V325 749 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 SRGNP10124 158 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 CASP7P55210 303 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 CHADLQ6NUI6 762 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 DZIP3Q86Y13 1208 aaKnown RBP11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 SUCLG2Q96I99 432 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 ZBTB3Q9H5J0 574 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 COL13A1Q5TAT6 717 aaPredicted RBP11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 PPP1R42Q7Z4L9 355 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 C9orf78Q9NZ63 289 aaPredicted RBP11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 SCN7AQ01118 1682 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 TIAM2Q8IVF5 1701 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 FER1L6Q2WGJ9 1857 aa11.8□□□□□ -0.52
PDLIM5-223ENST00000627587 IQCA1LA6NCM1 817 aa11.79□□□□□ -0.52
PDLIM5-223ENST00000627587 EPHA10Q5JZY3 1008 aa11.79□□□□□ -0.52
PDLIM5-223ENST00000627587 TPTE2Q6XPS3 522 aa11.79□□□□□ -0.52
PDLIM5-223ENST00000627587 TNS4Q8IZW8 715 aa11.79□□□□□ -0.52
PDLIM5-223ENST00000627587 ANKRD31Q8N7Z5 1873 aa11.79□□□□□ -0.52
PDLIM5-223ENST00000627587 HDAC5Q9UQL6 1122 aa11.79□□□□□ -0.52
PDLIM5-223ENST00000627587 EXOC6BQ9Y2D4 811 aa11.79□□□□□ -0.52
PDLIM5-223ENST00000627587 SMARCA5O60264 1052 aaPredicted RBP11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 NPR1P16066 1061 aa11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 JARID2Q92833 1246 aaPredicted RBP11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 BICC1Q9H694 974 aaKnown RBP11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 CREBZFQ9NS37 354 aa11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 MAP3K15Q6ZN16 1313 aa11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 KLRG2A4D1S0 409 aaPredicted RBP11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 CCDC93Q567U6 631 aa11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 PRPF40BQ6NWY9 871 aaKnown RBP11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 NBPF5PQ86XG9 351 aaPredicted RBP11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 OTUD7AQ8TE49 926 aaPredicted RBP11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 ISCA1Q9BUE6 129 aa11.78□□□□□ -0.52
PDLIM5-223ENST00000627587 SRGAP3O43295 1099 aa11.77□□□□□ -0.53
PDLIM5-223ENST00000627587 ALDH1B1P30837 517 aa11.77□□□□□ -0.53
PDLIM5-223ENST00000627587 HLFQ16534 295 aa11.77□□□□□ -0.53
PDLIM5-223ENST00000627587 FAM161AQ3B820 660 aa11.77□□□□□ -0.53
PDLIM5-223ENST00000627587 CCDC24Q8N4L8 307 aa11.77□□□□□ -0.53
PDLIM5-223ENST00000627587 MYH3P11055 1940 aa11.77□□□□□ -0.53
PDLIM5-223ENST00000627587 SALL3Q9BXA9 1300 aa11.77□□□□□ -0.53
PDLIM5-223ENST00000627587 H7C1W4 665 aa11.76□□□□□ -0.53
PDLIM5-223ENST00000627587 HSPA1AP0DMV8 641 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms