RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 BEND3Q5T5X7 828 aa21.42■■□□□ 1.02
TRIM28-215ENST00000601150 ZBED9Q6R2W3 1325 aa21.42■■□□□ 1.02
TRIM28-215ENST00000601150 GRAPLQ8TC17 118 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-215ENST00000601150 BCL2L13Q9BXK5 485 aa21.42■■□□□ 1.02
TRIM28-215ENST00000601150 SMC4Q9NTJ3 1288 aa21.42■■□□□ 1.02
TRIM28-215ENST00000601150 SNED1Q8TER0 1413 aa21.41■■□□□ 1.02
TRIM28-215ENST00000601150 FKBP4Q02790 459 aaKnown RBP eCLIP21.41■■□□□ 1.02
TRIM28-215ENST00000601150 GRIPAP1Q4V328 841 aa21.41■■□□□ 1.02
TRIM28-215ENST00000601150 UBE3BQ7Z3V4 1068 aa21.41■■□□□ 1.02
TRIM28-215ENST00000601150 TMX4Q9H1E5 349 aaPredicted RBP21.41■■□□□ 1.02
TRIM28-215ENST00000601150 LRRC37AA6NMS7 1700 aa21.41■■□□□ 1.02
TRIM28-215ENST00000601150 ZC3H4Q9UPT8 1303 aaKnown RBP21.4■■□□□ 1.02
TRIM28-215ENST00000601150 SLC4A10Q6U841 1118 aa21.4■■□□□ 1.02
TRIM28-215ENST00000601150 ATP6V0A2Q9Y487 856 aa21.4■■□□□ 1.02
TRIM28-215ENST00000601150 CCDC152Q4G0S7 254 aa21.39■■□□□ 1.01
TRIM28-215ENST00000601150 TMC4Q7Z404 712 aa21.39■■□□□ 1.01
TRIM28-215ENST00000601150 ZNF526Q8TF50 670 aaPredicted RBP21.39■■□□□ 1.01
TRIM28-215ENST00000601150 SP8Q8IXZ3 490 aa21.38■■□□□ 1.01
TRIM28-215ENST00000601150 PSMD1Q99460 953 aa21.38■■□□□ 1.01
TRIM28-215ENST00000601150 COL4A1P02462 1669 aa21.37■■□□□ 1.01
TRIM28-215ENST00000601150 ALDH1L1O75891 902 aa21.37■■□□□ 1.01
TRIM28-215ENST00000601150 CASP7P55210 303 aa21.37■■□□□ 1.01
TRIM28-215ENST00000601150 CTSWP56202 376 aa21.37■■□□□ 1.01
TRIM28-215ENST00000601150 SRCIN1Q9C0H9 1055 aa21.37■■□□□ 1.01
TRIM28-215ENST00000601150 GPBP1L1Q9HC44 474 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-215ENST00000601150 RARSP54136 660 aaKnown RBP21.36■■□□□ 1.01
TRIM28-215ENST00000601150 BRPF1P55201 1214 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-215ENST00000601150 SLC51AQ86UW1 340 aa21.36■■□□□ 1.01
TRIM28-215ENST00000601150 CELF1Q92879 486 aaKnown RBP21.36■■□□□ 1.01
TRIM28-215ENST00000601150 PLA2G12BQ9BX93 195 aa21.36■■□□□ 1.01
TRIM28-215ENST00000601150 ZNF277Q9NRM2 450 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-215ENST00000601150 SPEF2Q9C093 1822 aa21.36■■□□□ 1.01
TRIM28-215ENST00000601150 CCDC85AQ96PX6 553 aaPredicted RBP21.35■■□□□ 1.01
TRIM28-215ENST00000601150 GRM8O00222 908 aa21.34■■□□□ 1.01
TRIM28-215ENST00000601150 IARSP41252 1262 aaKnown RBP21.34■■□□□ 1.01
TRIM28-215ENST00000601150 RPS8P62241 208 aaKnown RBP21.34■■□□□ 1.01
TRIM28-215ENST00000601150 TTLL11Q8NHH1 800 aa21.34■■□□□ 1.01
TRIM28-215ENST00000601150 SEC31BQ9NQW1 1179 aa21.34■■□□□ 1.01
TRIM28-215ENST00000601150 RTL9Q8NET4 1388 aa21.34■■□□□ 1.01
TRIM28-215ENST00000601150 KDM2BQ8NHM5 1336 aa21.33■■□□□ 1.01
TRIM28-215ENST00000601150 MPNDQ8N594 471 aa21.33■■□□□ 1.01
TRIM28-215ENST00000601150 C9orf78Q9NZ63 289 aaPredicted RBP21.33■■□□□ 1.01
TRIM28-215ENST00000601150 NOB1Q9ULX3 412 aaKnown RBP21.33■■□□□ 1.01
TRIM28-215ENST00000601150 DPP8Q6V1X1 898 aaPredicted RBP21.32■■□□□ 1
TRIM28-215ENST00000601150 SUPT20HQ8NEM7 779 aa21.32■■□□□ 1
TRIM28-215ENST00000601150 KIF16BQ96L93 1317 aa21.31■■□□□ 1
TRIM28-215ENST00000601150 CDC5LQ99459 802 aaKnown RBP21.31■■□□□ 1
TRIM28-215ENST00000601150 RTFDC1Q9BY42 306 aaPredicted RBP21.31■■□□□ 1
TRIM28-215ENST00000601150 GREM2Q9H772 168 aa21.31■■□□□ 1
TRIM28-215ENST00000601150 LTBP1Q14766 1721 aa21.3■■□□□ 1
TRIM28-215ENST00000601150 GLTPD2A6NH11 291 aa21.3■■□□□ 1
TRIM28-215ENST00000601150 CSF1RP07333 972 aa21.3■■□□□ 1
TRIM28-215ENST00000601150 ANKRD18AQ8IVF6 992 aa21.3■■□□□ 1
TRIM28-215ENST00000601150 API5Q9BZZ5 524 aaKnown RBP21.3■■□□□ 1
TRIM28-215ENST00000601150 DUOX1Q9NRD9 1551 aa21.29■■□□□ 1
TRIM28-215ENST00000601150 DPY19L2Q6NUT2 758 aa21.29■■□□□ 1
TRIM28-215ENST00000601150 VPS33BQ9H267 617 aa21.29■■□□□ 1
TRIM28-215ENST00000601150 FOXO4P98177 505 aa21.28■■□□□ 1
TRIM28-215ENST00000601150 LARGE2Q8N3Y3 721 aa21.28■■□□□ 1
TRIM28-215ENST00000601150 JDP2Q8WYK2 163 aa21.28■■□□□ 1
TRIM28-215ENST00000601150 NSFL1CQ9UNZ2 370 aaKnown RBP21.28■■□□□ 1
TRIM28-215ENST00000601150 UTYO14607 1347 aa21.28■■□□□ 1
TRIM28-215ENST00000601150 COL4A5P29400 1685 aa21.28■■□□□ 1
TRIM28-215ENST00000601150 PPIP5K2O43314 1243 aa21.27■■□□□ 1
TRIM28-215ENST00000601150 CCT4P50991 539 aaKnown RBP21.27■■□□□ 1
TRIM28-215ENST00000601150 GPSM2P81274 684 aa21.27■■□□□ 1
TRIM28-215ENST00000601150 FAM161AQ3B820 660 aa21.27■■□□□ 1
TRIM28-215ENST00000601150 ARHGAP45Q92619 1136 aa21.27■■□□□ 1
TRIM28-215ENST00000601150 NMRK2Q9NPI5 230 aa21.27■■□□□ 1
TRIM28-215ENST00000601150 WDR90Q96KV7 1748 aa21.26■□□□□ 0.99
TRIM28-215ENST00000601150 IPO8O15397 1037 aaKnown RBP21.26■□□□□ 0.99
TRIM28-215ENST00000601150 BCAR3O75815 825 aa21.26■□□□□ 0.99
TRIM28-215ENST00000601150 ITGA6P23229 1130 aa21.26■□□□□ 0.99
TRIM28-215ENST00000601150 AOC3Q16853 763 aa21.26■□□□□ 0.99
TRIM28-215ENST00000601150 NBPF7P0C2Y1 421 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-215ENST00000601150 EPHA10Q5JZY3 1008 aa21.25■□□□□ 0.99
TRIM28-215ENST00000601150 LMBR1LQ6UX01 489 aa21.25■□□□□ 0.99
TRIM28-215ENST00000601150 NIM1KQ8IY84 436 aa21.25■□□□□ 0.99
TRIM28-215ENST00000601150 ANKRD18BA2A2Z9 1011 aa21.24■□□□□ 0.99
TRIM28-215ENST00000601150 FZD9O00144 591 aa21.24■□□□□ 0.99
TRIM28-215ENST00000601150 KIF3CO14782 793 aa21.24■□□□□ 0.99
TRIM28-215ENST00000601150 IGHMBP2P38935 993 aaKnown RBP21.24■□□□□ 0.99
TRIM28-215ENST00000601150 SUCLG2Q96I99 432 aa21.24■□□□□ 0.99
TRIM28-215ENST00000601150 RRAGCQ9HB90 399 aa21.24■□□□□ 0.99
TRIM28-215ENST00000601150 BSDC1Q9NW68 430 aaPredicted RBP21.24■□□□□ 0.99
TRIM28-215ENST00000601150 PODXL2Q9NZ53 605 aa21.24■□□□□ 0.99
TRIM28-215ENST00000601150 CHMP3Q9Y3E7 222 aa21.24■□□□□ 0.99
TRIM28-215ENST00000601150 C6orf229H3BNL8 230 aa21.23■□□□□ 0.99
TRIM28-215ENST00000601150 KIAA2012Q0VF49 1180 aa21.23■□□□□ 0.99
TRIM28-215ENST00000601150 IFIT5Q13325 482 aaKnown RBP21.23■□□□□ 0.99
TRIM28-215ENST00000601150 FRAT1Q92837 279 aaPredicted RBP21.23■□□□□ 0.99
TRIM28-215ENST00000601150 USP44Q9H0E7 712 aa21.23■□□□□ 0.99
TRIM28-215ENST00000601150 ANKIB1Q9P2G1 1089 aa21.23■□□□□ 0.99
TRIM28-215ENST00000601150 ZNF541Q9H0D2 1346 aa21.23■□□□□ 0.99
TRIM28-215ENST00000601150 DDNO94850 711 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-215ENST00000601150 EIF6P56537 245 aaKnown RBP21.22■□□□□ 0.99
TRIM28-215ENST00000601150 TBC1D16Q8TBP0 767 aa21.22■□□□□ 0.99
TRIM28-215ENST00000601150 KAZALD1Q96I82 304 aa21.22■□□□□ 0.99
TRIM28-215ENST00000601150 POLLQ9UGP5 575 aa21.22■□□□□ 0.99
TRIM28-215ENST00000601150 XDHP47989 1333 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms