RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 NEUROD2Q15784 382 aa15.35■□□□□ 0.05
CLIP3-204ENST00000590559 CST9Q5W186 159 aa15.35■□□□□ 0.05
CLIP3-204ENST00000590559 PLBD2Q8NHP8 589 aa15.35■□□□□ 0.05
CLIP3-204ENST00000590559 GRAPLQ8TC17 118 aaPredicted RBP15.35■□□□□ 0.05
CLIP3-204ENST00000590559 PGAP2Q9UHJ9 254 aa15.35■□□□□ 0.05
CLIP3-204ENST00000590559 TRMT112Q9UI30 125 aaKnown RBP15.35■□□□□ 0.05
CLIP3-204ENST00000590559 ZNF853P0CG23 659 aa15.34■□□□□ 0.05
CLIP3-204ENST00000590559 DPP8Q6V1X1 898 aaPredicted RBP15.34■□□□□ 0.05
CLIP3-204ENST00000590559 MPNDQ8N594 471 aa15.34■□□□□ 0.05
CLIP3-204ENST00000590559 CFAP44Q96MT7 982 aa15.34■□□□□ 0.05
CLIP3-204ENST00000590559 ADARB2Q9NS39 739 aaKnown RBP15.34■□□□□ 0.05
CLIP3-204ENST00000590559 WDR33Q9C0J8 1336 aaKnown RBP15.34■□□□□ 0.05
CLIP3-204ENST00000590559 CAPN15O75808 1086 aa15.33■□□□□ 0.04
CLIP3-204ENST00000590559 CTCFP49711 727 aaPredicted RBP15.33■□□□□ 0.04
CLIP3-204ENST00000590559 TRIM28Q13263 835 aaKnown RBP15.33■□□□□ 0.04
CLIP3-204ENST00000590559 SF3B3Q15393 1217 aaKnown RBP15.33■□□□□ 0.04
CLIP3-204ENST00000590559 HDGFL1Q5TGJ6 251 aa15.33■□□□□ 0.04
CLIP3-204ENST00000590559 ANKRD13DQ6ZTN6 518 aa15.33■□□□□ 0.04
CLIP3-204ENST00000590559 DDX46Q7L014 1031 aaKnown RBP15.33■□□□□ 0.04
CLIP3-204ENST00000590559 TMC4Q7Z404 712 aa15.33■□□□□ 0.04
CLIP3-204ENST00000590559 DBF4Q9UBU7 674 aaPredicted RBP15.33■□□□□ 0.04
CLIP3-204ENST00000590559 CDHR2Q9BYE9 1310 aa15.33■□□□□ 0.04
CLIP3-204ENST00000590559 YDJCA8MPS7 323 aa15.32■□□□□ 0.04
CLIP3-204ENST00000590559 GMPSP49915 693 aaPredicted RBP15.32■□□□□ 0.04
CLIP3-204ENST00000590559 TMX4Q9H1E5 349 aaPredicted RBP15.32■□□□□ 0.04
CLIP3-204ENST00000590559 TRAF5O00463 557 aa15.31■□□□□ 0.04
CLIP3-204ENST00000590559 HIRAP54198 1017 aaPredicted RBP15.31■□□□□ 0.04
CLIP3-204ENST00000590559 CIAPIN1Q6FI81 312 aa15.31■□□□□ 0.04
CLIP3-204ENST00000590559 MBIPQ9NS73 344 aa15.31■□□□□ 0.04
CLIP3-204ENST00000590559 TLL2Q9Y6L7 1015 aa15.31■□□□□ 0.04
CLIP3-204ENST00000590559 POLR2AP24928 1970 aaKnown RBP15.31■□□□□ 0.04
CLIP3-204ENST00000590559 HSPA8P11142 646 aaKnown RBP15.3■□□□□ 0.04
CLIP3-204ENST00000590559 PSME4Q14997 1843 aa15.3■□□□□ 0.04
CLIP3-204ENST00000590559 WDR43Q15061 677 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLIP3-204ENST00000590559 SCN9AQ15858 1988 aa15.3■□□□□ 0.04
CLIP3-204ENST00000590559 DUSP27Q5VZP5 1158 aa15.3■□□□□ 0.04
CLIP3-204ENST00000590559 CELF1Q92879 486 aaKnown RBP15.3■□□□□ 0.04
CLIP3-204ENST00000590559 FAM89AQ96GI7 184 aa15.3■□□□□ 0.04
CLIP3-204ENST00000590559 PRKRIP1Q9H875 184 aaPredicted RBP15.3■□□□□ 0.04
CLIP3-204ENST00000590559 HYPKQ9NX55 129 aa15.3■□□□□ 0.04
CLIP3-204ENST00000590559 LAS1LQ9Y4W2 734 aaKnown RBP15.3■□□□□ 0.04
CLIP3-204ENST00000590559 ATP5J2-PTCD1G3V325 749 aa15.29■□□□□ 0.04
CLIP3-204ENST00000590559 MAP2K1Q02750 393 aaPredicted RBP15.29■□□□□ 0.04
CLIP3-204ENST00000590559 ZC3H15Q8WU90 426 aaKnown RBP15.29■□□□□ 0.04
CLIP3-204ENST00000590559 ZNF428Q96B54 188 aa15.29■□□□□ 0.04
CLIP3-204ENST00000590559 AIDAQ96BJ3 306 aa15.29■□□□□ 0.04
CLIP3-204ENST00000590559 ABT1Q9ULW3 272 aaKnown RBP15.29■□□□□ 0.04
CLIP3-204ENST00000590559 RAD17O75943 681 aa15.28■□□□□ 0.04
CLIP3-204ENST00000590559 LBX1P52954 281 aa15.28■□□□□ 0.04
CLIP3-204ENST00000590559 TNIP1Q15025 636 aa15.28■□□□□ 0.04
CLIP3-204ENST00000590559 CAPNS2Q96L46 248 aa15.28■□□□□ 0.04
CLIP3-204ENST00000590559 POLLQ9UGP5 575 aa15.28■□□□□ 0.04
CLIP3-204ENST00000590559 SHTN1A0MZ66 631 aa15.27■□□□□ 0.04
CLIP3-204ENST00000590559 CYP4F22Q6NT55 531 aa15.27■□□□□ 0.04
CLIP3-204ENST00000590559 SAPCD2Q86UD0 394 aa15.27■□□□□ 0.04
CLIP3-204ENST00000590559 TRPM4Q8TD43 1214 aa15.27■□□□□ 0.04
CLIP3-204ENST00000590559 DPF2Q92785 391 aa15.27■□□□□ 0.04
CLIP3-204ENST00000590559 HHIPL1Q96JK4 782 aa15.27■□□□□ 0.04
CLIP3-204ENST00000590559 GLIS2Q9BZE0 524 aaPredicted RBP15.27■□□□□ 0.04
CLIP3-204ENST00000590559 IFT57Q9NWB7 429 aa15.27■□□□□ 0.04
CLIP3-204ENST00000590559 ECE1P42892 770 aa15.26■□□□□ 0.03
CLIP3-204ENST00000590559 GPR101Q96P66 508 aaPredicted RBP15.26■□□□□ 0.03
CLIP3-204ENST00000590559 PHAXQ9H814 394 aaKnown RBP15.26■□□□□ 0.03
CLIP3-204ENST00000590559 CNOT7Q9UIV1 285 aaKnown RBP15.26■□□□□ 0.03
CLIP3-204ENST00000590559 MYH3P11055 1940 aa15.25■□□□□ 0.03
CLIP3-204ENST00000590559 ZNF646O15015 1829 aaPredicted RBP15.25■□□□□ 0.03
CLIP3-204ENST00000590559 IRS4O14654 1257 aaPredicted RBP15.25■□□□□ 0.03
CLIP3-204ENST00000590559 APAF1O14727 1248 aa15.25■□□□□ 0.03
CLIP3-204ENST00000590559 GPSM2P81274 684 aa15.25■□□□□ 0.03
CLIP3-204ENST00000590559 WASHC4Q2M389 1173 aa15.25■□□□□ 0.03
CLIP3-204ENST00000590559 ZBTB38Q8NAP3 1195 aaPredicted RBP15.25■□□□□ 0.03
CLIP3-204ENST00000590559 PODXL2Q9NZ53 605 aa15.25■□□□□ 0.03
CLIP3-204ENST00000590559 NSFL1CQ9UNZ2 370 aaKnown RBP15.25■□□□□ 0.03
CLIP3-204ENST00000590559 RTL9Q8NET4 1388 aa15.24■□□□□ 0.03
CLIP3-204ENST00000590559 PSMD14O00487 310 aa15.24■□□□□ 0.03
CLIP3-204ENST00000590559 MAP2K2P36507 400 aa15.24■□□□□ 0.03
CLIP3-204ENST00000590559 RPS8P62241 208 aaKnown RBP15.24■□□□□ 0.03
CLIP3-204ENST00000590559 GNAI1P63096 354 aa15.24■□□□□ 0.03
CLIP3-204ENST00000590559 BCL2L13Q9BXK5 485 aa15.24■□□□□ 0.03
CLIP3-204ENST00000590559 KCNQ5Q9NR82 932 aa15.24■□□□□ 0.03
CLIP3-204ENST00000590559 ZBTB12Q9Y330 459 aaPredicted RBP15.24■□□□□ 0.03
CLIP3-204ENST00000590559 ZNF609O15014 1411 aa15.24■□□□□ 0.03
CLIP3-204ENST00000590559 CELF2O95319 508 aaKnown RBP15.23■□□□□ 0.03
CLIP3-204ENST00000590559 RTL5Q5HYW3 569 aaPredicted RBP15.23■□□□□ 0.03
CLIP3-204ENST00000590559 CDC37L1Q7L3B6 337 aa15.23■□□□□ 0.03
CLIP3-204ENST00000590559 MICALL2Q8IY33 904 aa15.23■□□□□ 0.03
CLIP3-204ENST00000590559 C8orf58Q8NAV2 365 aa15.23■□□□□ 0.03
CLIP3-204ENST00000590559 TBC1D16Q8TBP0 767 aa15.23■□□□□ 0.03
CLIP3-204ENST00000590559 DBNDD1Q9H9R9 158 aa15.23■□□□□ 0.03
CLIP3-204ENST00000590559 SEC31BQ9NQW1 1179 aa15.23■□□□□ 0.03
CLIP3-204ENST00000590559 H7C1D1 291 aa15.22■□□□□ 0.03
CLIP3-204ENST00000590559 AOC2O75106 756 aa15.22■□□□□ 0.03
CLIP3-204ENST00000590559 EGFRP00533 1210 aa15.22■□□□□ 0.03
CLIP3-204ENST00000590559 PCCAP05165 728 aaPredicted RBP15.22■□□□□ 0.03
CLIP3-204ENST00000590559 RPS12P25398 132 aaKnown RBP15.22■□□□□ 0.03
CLIP3-204ENST00000590559 RIC3Q7Z5B4 369 aa15.22■□□□□ 0.03
CLIP3-204ENST00000590559 CCDC191Q8NCU4 936 aa15.22■□□□□ 0.03
CLIP3-204ENST00000590559 TNRC18O15417 2968 aaPredicted RBP15.21■□□□□ 0.03
CLIP3-204ENST00000590559 RIMBP2O15034 1052 aa15.21■□□□□ 0.03
CLIP3-204ENST00000590559 ECE2O60344 883 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms