RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 PCCAP05165 728 aaPredicted RBP7.62□□□□□ -1.19
LIG3-206ENST00000586058 GTF2E1P29083 439 aaPredicted RBP7.62□□□□□ -1.19
LIG3-206ENST00000586058 EIF5P55010 431 aaKnown RBP7.62□□□□□ -1.19
LIG3-206ENST00000586058 ITPK1Q13572 414 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 CLASRPQ8N2M8 674 aaKnown RBP7.62□□□□□ -1.19
LIG3-206ENST00000586058 SSH3Q8TE77 659 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 SUCLG2Q96I99 432 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 SGIP1Q9BQI5 828 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 TRMT112Q9UI30 125 aaKnown RBP7.62□□□□□ -1.19
LIG3-206ENST00000586058 TBC1D2BQ9UPU7 963 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 EXOC6BQ9Y2D4 811 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 PCDHB13Q9Y5F0 798 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 SH3TC1Q8TE82 1336 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 LRP5O75197 1615 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 PNMA6EA0A0J9YXQ4 647 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 RPS6KA4O75676 772 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 GPTP24298 496 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 RFC4P35249 363 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 ANP32AP39687 249 aaKnown RBP7.61□□□□□ -1.19
LIG3-206ENST00000586058 TRIM28Q13263 835 aaKnown RBP7.61□□□□□ -1.19
LIG3-206ENST00000586058 CCDC57Q2TAC2 916 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 CLEC4GQ6UXB4 293 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 MAMSTRQ6ZN01 415 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 ZBTB38Q8NAP3 1195 aaPredicted RBP7.61□□□□□ -1.19
LIG3-206ENST00000586058 LINC00116Q8NCU8 138 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 SLC4A9Q96Q91 983 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 ISCA1Q9BUE6 129 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 NYXQ9GZU5 481 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 NIP7Q9Y221 180 aaKnown RBP eCLIP7.61□□□□□ -1.19
LIG3-206ENST00000586058 CCDC88AQ3V6T2 1871 aa7.61□□□□□ -1.19
LIG3-206ENST00000586058 AOX1Q06278 1338 aa7.6□□□□□ -1.19
LIG3-206ENST00000586058 POTEMA6NI47 508 aa7.6□□□□□ -1.19
LIG3-206ENST00000586058 ERC2O15083 957 aa7.6□□□□□ -1.19
LIG3-206ENST00000586058 IFIT2P09913 472 aaKnown RBP7.6□□□□□ -1.19
LIG3-206ENST00000586058 RTL5Q5HYW3 569 aaPredicted RBP7.6□□□□□ -1.19
LIG3-206ENST00000586058 INTS5Q6P9B9 1019 aaKnown RBP7.6□□□□□ -1.19
LIG3-206ENST00000586058 ERICH6Q7L0X2 663 aa7.6□□□□□ -1.19
LIG3-206ENST00000586058 NLRP10Q86W26 655 aa7.6□□□□□ -1.19
LIG3-206ENST00000586058 SIRT2Q8IXJ6 389 aa7.6□□□□□ -1.19
LIG3-206ENST00000586058 FAM212AQ96EL1 285 aa7.6□□□□□ -1.19
LIG3-206ENST00000586058 UTP14AQ9BVJ6 771 aaKnown RBP7.6□□□□□ -1.19
LIG3-206ENST00000586058 COLQQ9Y215 455 aaPredicted RBP7.6□□□□□ -1.19
LIG3-206ENST00000586058 CARMIL3Q8ND23 1372 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 H7C1W4 665 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 PDE8AO60658 829 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 PHF14O94880 888 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 CAMTA2O94983 1202 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 APBA3O96018 575 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 MX1P20591 662 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 PDE4AP27815 886 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 SSFA2P28290 1259 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 IFIT5Q13325 482 aaKnown RBP7.59□□□□□ -1.19
LIG3-206ENST00000586058 RABL6Q3YEC7 729 aaPredicted RBP7.59□□□□□ -1.19
LIG3-206ENST00000586058 BMP2KLQ5H9B9 411 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 TRAPPC3LQ5T215 181 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 LMBR1LQ6UX01 489 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 IFNL1Q8IU54 200 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 FLAD1Q8NFF5 587 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 RHPN1Q8TCX5 695 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 NARFQ9UHQ1 456 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 FBXO3Q9UK99 471 aa7.59□□□□□ -1.19
LIG3-206ENST00000586058 TNRC6CQ9HCJ0 1690 aaKnown RBP7.59□□□□□ -1.19
LIG3-206ENST00000586058 NRXN2Q9P2S2 1712 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 TTC41PQ6P2S7 1318 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 TAF1P21675 1872 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 ANKRD18BA2A2Z9 1011 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 IRS4O14654 1257 aaPredicted RBP7.58□□□□□ -1.2
LIG3-206ENST00000586058 PLSCR1O15162 318 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 CDC45O75419 566 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 CTSWP56202 376 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 HLFQ16534 295 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 CCDC152Q4G0S7 254 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 POTEGQ6S5H5 508 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 ZNF34Q8IZ26 560 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 FAM89AQ96GI7 184 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 SETDB2Q96T68 719 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 PLA2G12BQ9BX93 195 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 SIL1Q9H173 461 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 SCUBE2Q9NQ36 999 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 COPRSQ9NQ92 184 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 PLSCR2Q9NRY7 297 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 MAST2Q6P0Q8 1798 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 CHD4Q14839 1912 aa7.58□□□□□ -1.2
LIG3-206ENST00000586058 DOCK2Q92608 1830 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 USP42Q9H9J4 1324 aaKnown RBP7.57□□□□□ -1.2
LIG3-206ENST00000586058 FAM177BA6PVY3 158 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 TRIM6-TRIM34B2RNG4 842 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 SMARCA5O60264 1052 aaPredicted RBP7.57□□□□□ -1.2
LIG3-206ENST00000586058 IL15P40933 162 aaPredicted RBP7.57□□□□□ -1.2
LIG3-206ENST00000586058 BAG6P46379 1132 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 ST5P78524 1137 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 TXNRD1Q16881 649 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 LCE2DQ5TA82 110 aaPredicted RBP7.57□□□□□ -1.2
LIG3-206ENST00000586058 TTC22Q5TAA0 569 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 USPL1Q5W0Q7 1092 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 AACSQ86V21 672 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 NBPF5PQ86XG9 351 aaPredicted RBP7.57□□□□□ -1.2
LIG3-206ENST00000586058 CNTROBQ8N137 903 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 CDC5LQ99459 802 aaKnown RBP7.57□□□□□ -1.2
LIG3-206ENST00000586058 BACH2Q9BYV9 841 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms