RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 CWC25Q9NXE8 425 aaPredicted RBP12.79□□□□□ -0.36
LIG3-203ENST00000585370 RNF181Q9P0P0 153 aa12.79□□□□□ -0.36
LIG3-203ENST00000585370 AOX1Q06278 1338 aa12.79□□□□□ -0.36
LIG3-203ENST00000585370 H7C1W4 665 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 IL6STP40189 918 aaPredicted RBP12.78□□□□□ -0.36
LIG3-203ENST00000585370 TCIRG1Q13488 830 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 TTC22Q5TAA0 569 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 BICDL1Q6ZP65 573 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 TTLL7Q6ZT98 887 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 SUCLG2Q96I99 432 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 STAP2Q9UGK3 403 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 EXOC6BQ9Y2D4 811 aa12.78□□□□□ -0.36
LIG3-203ENST00000585370 NRXN2Q9P2S2 1712 aa12.77□□□□□ -0.36
LIG3-203ENST00000585370 SBF1O95248 1867 aa12.77□□□□□ -0.37
LIG3-203ENST00000585370 A0A087WZG4 1122 aa12.77□□□□□ -0.37
LIG3-203ENST00000585370 ERVV-1B6SEH8 477 aa12.77□□□□□ -0.37
LIG3-203ENST00000585370 PRELPP51888 382 aa12.77□□□□□ -0.37
LIG3-203ENST00000585370 TBC1D9BQ66K14 1250 aa12.77□□□□□ -0.37
LIG3-203ENST00000585370 TBC1D2BQ9UPU7 963 aa12.77□□□□□ -0.37
LIG3-203ENST00000585370 SMARCA5O60264 1052 aaPredicted RBP12.76□□□□□ -0.37
LIG3-203ENST00000585370 CDC45O75419 566 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 PIP4K2AP48426 406 aaPredicted RBP12.76□□□□□ -0.37
LIG3-203ENST00000585370 APLP1P51693 650 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 PDE1AP54750 535 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 RASSF7Q02833 373 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 G3BP1Q13283 466 aaKnown RBP eCLIP12.76□□□□□ -0.37
LIG3-203ENST00000585370 RABL6Q3YEC7 729 aaPredicted RBP12.76□□□□□ -0.37
LIG3-203ENST00000585370 CASC1Q6TDU7 716 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 C2CD5Q86YS7 1000 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 DNAJC5GQ8N7S2 189 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 TTLL6Q8N841 843 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 RHPN1Q8TCX5 695 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 ISCA1Q9BUE6 129 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 BICC1Q9H694 974 aaKnown RBP12.76□□□□□ -0.37
LIG3-203ENST00000585370 RRAGCQ9HB90 399 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 MAP3K15Q6ZN16 1313 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 CARMIL3Q8ND23 1372 aa12.76□□□□□ -0.37
LIG3-203ENST00000585370 ATP5J2-PTCD1G3V325 749 aa12.75□□□□□ -0.37
LIG3-203ENST00000585370 H0YIN7 160 aa12.75□□□□□ -0.37
LIG3-203ENST00000585370 APBB1O00213 710 aa12.75□□□□□ -0.37
LIG3-203ENST00000585370 CASP7P55210 303 aa12.75□□□□□ -0.37
LIG3-203ENST00000585370 OS9Q13438 667 aaPredicted RBP12.75□□□□□ -0.37
LIG3-203ENST00000585370 GIGYF2Q6Y7W6 1299 aaKnown RBP12.75□□□□□ -0.37
LIG3-203ENST00000585370 C16orf71Q8IYS4 520 aaPredicted RBP12.75□□□□□ -0.37
LIG3-203ENST00000585370 RBM46Q8TBY0 533 aaKnown RBP12.75□□□□□ -0.37
LIG3-203ENST00000585370 KAZALD1Q96I82 304 aa12.75□□□□□ -0.37
LIG3-203ENST00000585370 SALL3Q9BXA9 1300 aa12.74□□□□□ -0.37
LIG3-203ENST00000585370 MX1P20591 662 aa12.74□□□□□ -0.37
LIG3-203ENST00000585370 IFFO2Q5TF58 517 aa12.74□□□□□ -0.37
LIG3-203ENST00000585370 UBE3BQ7Z3V4 1068 aa12.74□□□□□ -0.37
LIG3-203ENST00000585370 CLASRPQ8N2M8 674 aaKnown RBP12.74□□□□□ -0.37
LIG3-203ENST00000585370 CCDC24Q8N4L8 307 aa12.74□□□□□ -0.37
LIG3-203ENST00000585370 ZBTB3Q9H5J0 574 aa12.74□□□□□ -0.37
LIG3-203ENST00000585370 COPRSQ9NQ92 184 aa12.74□□□□□ -0.37
LIG3-203ENST00000585370 ZNF330Q9Y3S2 320 aaPredicted RBP12.74□□□□□ -0.37
LIG3-203ENST00000585370 RGL2O15211 777 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 CAMTA2O94983 1202 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 PCCAP05165 728 aaPredicted RBP12.73□□□□□ -0.37
LIG3-203ENST00000585370 LMNB1P20700 586 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 PRR5LQ6MZQ0 368 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 GPATCH3Q96I76 525 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 TBC1D32Q96NH3 1257 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 BRIP1Q9BX63 1249 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 ARFGEF2Q9Y6D5 1785 aa12.73□□□□□ -0.37
LIG3-203ENST00000585370 TTC41PQ6P2S7 1318 aa12.72□□□□□ -0.37
LIG3-203ENST00000585370 NFKBIEO00221 500 aa12.72□□□□□ -0.37
LIG3-203ENST00000585370 SEC24BO95487 1268 aa12.72□□□□□ -0.37
LIG3-203ENST00000585370 GSPT1P15170 499 aaKnown RBP12.72□□□□□ -0.37
LIG3-203ENST00000585370 PLA2G12BQ9BX93 195 aa12.72□□□□□ -0.37
LIG3-203ENST00000585370 FBXO3Q9UK99 471 aa12.72□□□□□ -0.37
LIG3-203ENST00000585370 DLEC1Q9Y238 1755 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 ERC2O15083 957 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 HSP90B1P14625 803 aaKnown RBP12.71□□□□□ -0.37
LIG3-203ENST00000585370 PDE6BP35913 854 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 HTRA3P83110 453 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 FSTL1Q12841 308 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 TBC1D9Q6ZT07 1266 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 DZIP3Q86Y13 1208 aaKnown RBP12.71□□□□□ -0.37
LIG3-203ENST00000585370 ZBTB38Q8NAP3 1195 aaPredicted RBP12.71□□□□□ -0.37
LIG3-203ENST00000585370 OTUD7AQ8TE49 926 aaPredicted RBP12.71□□□□□ -0.37
LIG3-203ENST00000585370 ZNF622Q969S3 477 aaKnown RBP eCLIP12.71□□□□□ -0.37
LIG3-203ENST00000585370 SETDB2Q96T68 719 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 C22orf23Q9BZE7 217 aa12.71□□□□□ -0.37
LIG3-203ENST00000585370 DAXXQ9UER7 740 aaPredicted RBP12.71□□□□□ -0.37
LIG3-203ENST00000585370 ANKRD31Q8N7Z5 1873 aa12.7□□□□□ -0.38
LIG3-203ENST00000585370 CDHR2Q9BYE9 1310 aa12.7□□□□□ -0.38
LIG3-203ENST00000585370 ZC3H4Q9UPT8 1303 aaKnown RBP12.7□□□□□ -0.38
LIG3-203ENST00000585370 GLTPD2A6NH11 291 aa12.7□□□□□ -0.38
LIG3-203ENST00000585370 C21orf2O43822 256 aa12.7□□□□□ -0.38
LIG3-203ENST00000585370 IFIT2P09913 472 aaKnown RBP12.7□□□□□ -0.38
LIG3-203ENST00000585370 SDSP20132 328 aa12.7□□□□□ -0.38
LIG3-203ENST00000585370 FOXO4P98177 505 aa12.7□□□□□ -0.38
LIG3-203ENST00000585370 EPHA10Q5JZY3 1008 aa12.7□□□□□ -0.38
LIG3-203ENST00000585370 GLRX3O76003 335 aaKnown RBP12.69□□□□□ -0.38
LIG3-203ENST00000585370 RFX5P48382 616 aaPredicted RBP12.69□□□□□ -0.38
LIG3-203ENST00000585370 MFAP1P55081 439 aaKnown RBP12.69□□□□□ -0.38
LIG3-203ENST00000585370 BECN1Q14457 450 aa12.69□□□□□ -0.38
LIG3-203ENST00000585370 LMBR1LQ6UX01 489 aa12.69□□□□□ -0.38
LIG3-203ENST00000585370 IL1RAPL2Q9NP60 686 aa12.69□□□□□ -0.38
LIG3-203ENST00000585370 ZNF219Q9P2Y4 722 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms