RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 TMPOP42166 694 aaKnown RBP3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 GNAQP50148 359 aa3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 ERFEQ4G0M1 354 aa3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC82Q8N4S0 544 aa3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 MTIF3Q9H2K0 278 aaKnown RBP3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 CEP131Q9UPN4 1083 aa3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 IQSEC3Q9UPP2 1182 aaPredicted RBP3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 CUL7Q14999 1698 aa3.42□□□□□ -1.86
SMCHD1-203ENST00000577880 NPHP4O75161 1426 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 STK25O00506 426 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 PRC1O43663 620 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 CDR1P51861 262 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 DCTN1Q14203 1278 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC93Q567U6 631 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 HACE1Q8IYU2 909 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 ERMNQ8TAM6 284 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 TBC1D22AQ8WUA7 517 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 BICD1Q96G01 975 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 NAT10Q9H0A0 1025 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 IL1RAPL2Q9NP60 686 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 IFT57Q9NWB7 429 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC39Q9UFE4 941 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 FAM83GA6ND36 823 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 NOP56O00567 594 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 BACH1O14867 736 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 IFIT3O14879 490 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 FOXK2Q01167 660 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 GLIPR1L2Q4G1C9 344 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 USP37Q86T82 979 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 CERS3Q8IU89 383 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 CCAR2Q8N163 923 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 SLC10A4Q96EP9 437 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 C6orf50Q9HD87 102 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 ZNHIT6Q9NWK9 470 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 RNF181Q9P0P0 153 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 NOB1Q9ULX3 412 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 KIF7Q2M1P5 1343 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 JCADQ9P266 1359 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 BLMP54132 1417 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 NR1I2O75469 434 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 FMNL1O95466 1100 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 R3HDM1Q15032 1099 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 DHX37Q8IY37 1157 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 TXLNBQ8N3L3 684 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 TTLL6Q8N841 843 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 UBA5Q9GZZ9 404 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 HOMER2Q9NSB8 354 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 SEPT11Q9NVA2 429 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 RBM19Q9Y4C8 960 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 SLC12A7Q9Y666 1083 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 FLT4P35916 1363 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 CAMSAP2Q08AD1 1489 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 KINO60870 393 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 BCAR3O75815 825 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 UQCRHP07919 91 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 HIBADHP31937 336 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 SSR1P43307 286 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 MCM2P49736 904 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC174Q6PII3 467 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 GADL1Q6ZQY3 521 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 MFSD6Q6ZSS7 791 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 WDR66Q8TBY9 1149 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 DDX17Q92841 729 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 LRRC45Q96CN5 670 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 BOLA2Q9H3K6 86 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 PHAXQ9H814 394 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 SNRKQ9NRH2 765 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 PODXL2Q9NZ53 605 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 DENND2AQ9ULE3 1009 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 SSX2IPQ9Y2D8 614 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 PARD3Q8TEW0 1356 aa3.41□□□□□ -1.86
SMCHD1-203ENST00000577880 PI4KAP2A4QPH2 592 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 SPDYE3A6NKU9 549 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 EPB41L2O43491 1005 aaKnown RBP3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 ZEB2O60315 1214 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 MYCP01106 439 aaPredicted RBP3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 OSBPP22059 807 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 ECE1P42892 770 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 IREB2P48200 963 aaKnown RBP3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 ANAPC15P60006 121 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 RAB3GAP1Q15042 981 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 DPP9Q86TI2 863 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 TEX11Q8IYF3 940 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 RTKN2Q8IZC4 609 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 PI4KAP1Q8N8J0 262 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 FERMT1Q9BQL6 677 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 PAGR1Q9BTK6 254 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 DACH1Q9UI36 760 aa3.4□□□□□ -1.86
SMCHD1-203ENST00000577880 IL15P40933 162 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 FLIIQ13045 1269 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 TMC4Q7Z404 712 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 HOMER1Q86YM7 354 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 SMARCE1Q969G3 411 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 LBHD1Q9BQE6 289 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 TAOK3Q9H2K8 898 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 PRDM10Q9NQV6 1147 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 COMMD10Q9Y6G5 202 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ABCC5O15440 1437 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 SUPT6HQ7KZ85 1726 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ANKRD62A6NC57 917 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms