RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 WBP1LQ9NX94 342 aa27.49■■□□□ 1.99
VPS53-216ENST00000574029 GPRC5DQ9NZD1 345 aa27.49■■□□□ 1.99
VPS53-216ENST00000574029 ADAMTS8Q9UP79 889 aa27.49■■□□□ 1.99
VPS53-216ENST00000574029 LRRC37AA6NMS7 1700 aa27.48■■□□□ 1.99
VPS53-216ENST00000574029 AIDAQ96BJ3 306 aa27.48■■□□□ 1.99
VPS53-216ENST00000574029 PRDM10Q9NQV6 1147 aa27.48■■□□□ 1.99
VPS53-216ENST00000574029 TRPM7Q96QT4 1865 aa27.48■■□□□ 1.99
VPS53-216ENST00000574029 KIAA2012Q0VF49 1180 aa27.47■■□□□ 1.99
VPS53-216ENST00000574029 ADARB2Q9NS39 739 aaKnown RBP27.47■■□□□ 1.99
VPS53-216ENST00000574029 DBF4Q9UBU7 674 aaPredicted RBP27.47■■□□□ 1.99
VPS53-216ENST00000574029 ABT1Q9ULW3 272 aaKnown RBP27.47■■□□□ 1.99
VPS53-216ENST00000574029 CTCFP49711 727 aaPredicted RBP27.46■■□□□ 1.99
VPS53-216ENST00000574029 FMR1Q06787 632 aaKnown RBP eCLIP27.46■■□□□ 1.994e-8■■■■■ 46.3
VPS53-216ENST00000574029 ANKRD13DQ6ZTN6 518 aa27.46■■□□□ 1.99
VPS53-216ENST00000574029 TMC4Q7Z404 712 aa27.46■■□□□ 1.99
VPS53-216ENST00000574029 ISCA1Q9BUE6 129 aa27.46■■□□□ 1.99
VPS53-216ENST00000574029 WDR33Q9C0J8 1336 aaKnown RBP27.45■■□□□ 1.99
VPS53-216ENST00000574029 DUOX1Q9NRD9 1551 aa27.45■■□□□ 1.99
VPS53-216ENST00000574029 CFAP44Q96MT7 982 aa27.45■■□□□ 1.98
VPS53-216ENST00000574029 THSD7BQ9C0I4 1608 aa27.44■■□□□ 1.98
VPS53-216ENST00000574029 CDHR2Q9BYE9 1310 aa27.43■■□□□ 1.98
VPS53-216ENST00000574029 GMPSP49915 693 aaPredicted RBP27.43■■□□□ 1.98
VPS53-216ENST00000574029 CIAPIN1Q6FI81 312 aa27.43■■□□□ 1.98
VPS53-216ENST00000574029 ZNF428Q96B54 188 aa27.43■■□□□ 1.98
VPS53-216ENST00000574029 TRAF5O00463 557 aa27.42■■□□□ 1.98
VPS53-216ENST00000574029 SF3B3Q15393 1217 aaKnown RBP27.42■■□□□ 1.98
VPS53-216ENST00000574029 DUSP27Q5VZP5 1158 aa27.42■■□□□ 1.98
VPS53-216ENST00000574029 CST9Q5W186 159 aa27.42■■□□□ 1.98
VPS53-216ENST00000574029 HYPKQ9NX55 129 aa27.42■■□□□ 1.98
VPS53-216ENST00000574029 FAM89AQ96GI7 184 aa27.41■■□□□ 1.98
VPS53-216ENST00000574029 MBIPQ9NS73 344 aa27.41■■□□□ 1.98
VPS53-216ENST00000574029 ATP5J2-PTCD1G3V325 749 aa27.4■■□□□ 1.98
VPS53-216ENST00000574029 MAP2K1Q02750 393 aaPredicted RBP27.4■■□□□ 1.98
VPS53-216ENST00000574029 TNIP1Q15025 636 aa27.4■■□□□ 1.98
VPS53-216ENST00000574029 PGAP2Q9UHJ9 254 aa27.4■■□□□ 1.98
VPS53-216ENST00000574029 RAD17O75943 681 aa27.39■■□□□ 1.98
VPS53-216ENST00000574029 ZNF853P0CG23 659 aa27.39■■□□□ 1.98
VPS53-216ENST00000574029 TRIM28Q13263 835 aaKnown RBP27.39■■□□□ 1.98
VPS53-216ENST00000574029 COL4A1P02462 1669 aa27.38■■□□□ 1.97
VPS53-216ENST00000574029 YDJCA8MPS7 323 aa27.38■■□□□ 1.97
VPS53-216ENST00000574029 LBX1P52954 281 aa27.38■■□□□ 1.97
VPS53-216ENST00000574029 CELF1Q92879 486 aaKnown RBP27.38■■□□□ 1.97
VPS53-216ENST00000574029 BCL2L13Q9BXK5 485 aa27.38■■□□□ 1.97
VPS53-216ENST00000574029 PRKRIP1Q9H875 184 aaPredicted RBP27.38■■□□□ 1.97
VPS53-216ENST00000574029 TLL2Q9Y6L7 1015 aa27.38■■□□□ 1.97
VPS53-216ENST00000574029 ECE1P42892 770 aa27.37■■□□□ 1.97
VPS53-216ENST00000574029 CAPNS2Q96L46 248 aa27.37■■□□□ 1.97
VPS53-216ENST00000574029 HSPA8P11142 646 aaKnown RBP27.36■■□□□ 1.97
VPS53-216ENST00000574029 ZC3H15Q8WU90 426 aaKnown RBP27.36■■□□□ 1.97
VPS53-216ENST00000574029 HIRAP54198 1017 aaPredicted RBP27.35■■□□□ 1.97
VPS53-216ENST00000574029 NSFL1CQ9UNZ2 370 aaKnown RBP27.35■■□□□ 1.97
VPS53-216ENST00000574029 WASHC4Q2M389 1173 aa27.34■■□□□ 1.97
VPS53-216ENST00000574029 CYP4F22Q6NT55 531 aa27.34■■□□□ 1.97
VPS53-216ENST00000574029 PAXIP1Q6ZW49 1069 aaPredicted RBP27.34■■□□□ 1.97
VPS53-216ENST00000574029 IFT57Q9NWB7 429 aa27.34■■□□□ 1.97
VPS53-216ENST00000574029 CNOT7Q9UIV1 285 aaKnown RBP27.34■■□□□ 1.97
VPS53-216ENST00000574029 IRS4O14654 1257 aaPredicted RBP27.33■■□□□ 1.97
VPS53-216ENST00000574029 RTL5Q5HYW3 569 aaPredicted RBP27.33■■□□□ 1.97
VPS53-216ENST00000574029 GPR101Q96P66 508 aaPredicted RBP27.33■■□□□ 1.97
VPS53-216ENST00000574029 GLIS2Q9BZE0 524 aaPredicted RBP27.33■■□□□ 1.97
VPS53-216ENST00000574029 APAF1O14727 1248 aa27.32■■□□□ 1.96
VPS53-216ENST00000574029 RIC3Q7Z5B4 369 aa27.32■■□□□ 1.96
VPS53-216ENST00000574029 TRPM4Q8TD43 1214 aa27.32■■□□□ 1.96
VPS53-216ENST00000574029 SHTN1A0MZ66 631 aa27.31■■□□□ 1.96
VPS53-216ENST00000574029 CELF2O95319 508 aaKnown RBP27.31■■□□□ 1.96
VPS53-216ENST00000574029 GNAI1P63096 354 aa27.31■■□□□ 1.96
VPS53-216ENST00000574029 GPSM2P81274 684 aa27.31■■□□□ 1.96
VPS53-216ENST00000574029 CALD1Q05682 793 aaKnown RBP27.31■■□□□ 1.96
VPS53-216ENST00000574029 GOLGA2Q08379 1002 aa27.31■■□□□ 1.96
VPS53-216ENST00000574029 SAPCD2Q86UD0 394 aa27.31■■□□□ 1.96
VPS53-216ENST00000574029 ZBTB38Q8NAP3 1195 aaPredicted RBP27.31■■□□□ 1.96
VPS53-216ENST00000574029 DPF2Q92785 391 aa27.31■■□□□ 1.96
VPS53-216ENST00000574029 PHAXQ9H814 394 aaKnown RBP27.31■■□□□ 1.96
VPS53-216ENST00000574029 POLLQ9UGP5 575 aa27.31■■□□□ 1.96
VPS53-216ENST00000574029 H7C1D1 291 aa27.3■■□□□ 1.96
VPS53-216ENST00000574029 RPS8P62241 208 aaKnown RBP27.3■■□□□ 1.96
VPS53-216ENST00000574029 DBNDD1Q9H9R9 158 aa27.3■■□□□ 1.96
VPS53-216ENST00000574029 C6orf229H3BNL8 230 aa27.29■■□□□ 1.96
VPS53-216ENST00000574029 PSMD14O00487 310 aa27.29■■□□□ 1.96
VPS53-216ENST00000574029 GRM1Q13255 1194 aa27.29■■□□□ 1.96
VPS53-216ENST00000574029 CDC37L1Q7L3B6 337 aa27.29■■□□□ 1.96
VPS53-216ENST00000574029 MICALL2Q8IY33 904 aa27.29■■□□□ 1.96
VPS53-216ENST00000574029 HHIPL1Q96JK4 782 aa27.29■■□□□ 1.96
VPS53-216ENST00000574029 ZBTB12Q9Y330 459 aaPredicted RBP27.29■■□□□ 1.96
VPS53-216ENST00000574029 ELL2O00472 640 aaPredicted RBP27.28■■□□□ 1.96
VPS53-216ENST00000574029 RIMBP2O15034 1052 aa27.28■■□□□ 1.96
VPS53-216ENST00000574029 MAP2K2P36507 400 aa27.28■■□□□ 1.96
VPS53-216ENST00000574029 EYA3Q99504 573 aa27.28■■□□□ 1.96
VPS53-216ENST00000574029 TBC1D16Q8TBP0 767 aa27.27■■□□□ 1.96
VPS53-216ENST00000574029 HSP90B1P14625 803 aaKnown RBP27.26■■□□□ 1.95
VPS53-216ENST00000574029 C8orf58Q8NAV2 365 aa27.26■■□□□ 1.95
VPS53-216ENST00000574029 CCDC191Q8NCU4 936 aa27.26■■□□□ 1.95
VPS53-216ENST00000574029 MYD88Q99836 296 aa27.26■■□□□ 1.95
VPS53-216ENST00000574029 BEGAINQ9BUH8 593 aa27.26■■□□□ 1.95
VPS53-216ENST00000574029 ECE2O60344 883 aa27.25■■□□□ 1.95
VPS53-216ENST00000574029 AOC2O75106 756 aa27.25■■□□□ 1.95
VPS53-216ENST00000574029 RPS12P25398 132 aaKnown RBP27.25■■□□□ 1.95
VPS53-216ENST00000574029 SEC31BQ9NQW1 1179 aa27.25■■□□□ 1.95
VPS53-216ENST00000574029 PODXL2Q9NZ53 605 aa27.25■■□□□ 1.95
VPS53-216ENST00000574029 RTL9Q8NET4 1388 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms