RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CWC25Q9NXE8 425 aaPredicted RBP9.84□□□□□ -0.83
VPS39-213ENST00000570062 NOP58Q9Y2X3 529 aaKnown RBP9.84□□□□□ -0.83
VPS39-213ENST00000570062 LRRFIP2Q9Y608 721 aaKnown RBP9.84□□□□□ -0.83
VPS39-213ENST00000570062 LRP5O75197 1615 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 AFF2P51816 1311 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 LOC102724428A0A0B4J2F2 783 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 A0A0G2JS52 829 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 NBPF26B4DH59 902 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 SRGAP3O43295 1099 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 A1BGP04217 495 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 SIK1P57059 783 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 MYT1Q01538 1121 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 TCIRG1Q13488 830 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 NBPF14Q5TI25 921 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 DMRTA1Q5VZB9 504 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 NBPF10Q6P3W6 841 aaKnown RBP9.83□□□□□ -0.84
VPS39-213ENST00000570062 CASC1Q6TDU7 716 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 DNAJC10Q8IXB1 793 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 NBPF15Q8N660 670 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 LNPKQ9C0E8 428 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 OSBPL3Q9H4L5 887 aa9.83□□□□□ -0.84
VPS39-213ENST00000570062 SURF6O75683 361 aaKnown RBP9.82□□□□□ -0.84
VPS39-213ENST00000570062 IGKV5-2P06315 115 aa9.82□□□□□ -0.84
VPS39-213ENST00000570062 NBPF7P0C2Y1 421 aaPredicted RBP9.82□□□□□ -0.84
VPS39-213ENST00000570062 ATP6V1AP38606 617 aa9.82□□□□□ -0.84
VPS39-213ENST00000570062 PPP1R42Q7Z4L9 355 aa9.82□□□□□ -0.84
VPS39-213ENST00000570062 DDRGK1Q96HY6 314 aa9.82□□□□□ -0.84
VPS39-213ENST00000570062 AK7Q96M32 723 aa9.82□□□□□ -0.84
VPS39-213ENST00000570062 AOX1Q06278 1338 aa9.82□□□□□ -0.84
VPS39-213ENST00000570062 MAP3K15Q6ZN16 1313 aa9.82□□□□□ -0.84
VPS39-213ENST00000570062 H7C1W4 665 aa9.81□□□□□ -0.84
VPS39-213ENST00000570062 G3BP1Q13283 466 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS39-213ENST00000570062 RC3H1Q5TC82 1133 aaKnown RBP9.81□□□□□ -0.84
VPS39-213ENST00000570062 GIGYF2Q6Y7W6 1299 aaKnown RBP9.81□□□□□ -0.84
VPS39-213ENST00000570062 CLASRPQ8N2M8 674 aaKnown RBP9.81□□□□□ -0.84
VPS39-213ENST00000570062 GPATCH3Q96I76 525 aa9.81□□□□□ -0.84
VPS39-213ENST00000570062 ISCA1Q9BUE6 129 aa9.81□□□□□ -0.84
VPS39-213ENST00000570062 QTRT2Q9H974 415 aaKnown RBP9.81□□□□□ -0.84
VPS39-213ENST00000570062 CCDC87Q9NVE4 849 aa9.81□□□□□ -0.84
VPS39-213ENST00000570062 ZNF652Q9Y2D9 606 aa9.81□□□□□ -0.84
VPS39-213ENST00000570062 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.81□□□□□ -0.84
VPS39-213ENST00000570062 PAPPAQ13219 1627 aa9.81□□□□□ -0.84
VPS39-213ENST00000570062 ATRNO75882 1429 aa9.81□□□□□ -0.84
VPS39-213ENST00000570062 PALLDQ8WX93 1383 aa9.8□□□□□ -0.84
VPS39-213ENST00000570062 HRO43593 1189 aa9.8□□□□□ -0.84
VPS39-213ENST00000570062 EIF5P55010 431 aaKnown RBP9.8□□□□□ -0.84
VPS39-213ENST00000570062 CWF19L2Q2TBE0 894 aaKnown RBP9.8□□□□□ -0.84
VPS39-213ENST00000570062 RABL6Q3YEC7 729 aaPredicted RBP9.8□□□□□ -0.84
VPS39-213ENST00000570062 CLEC4GQ6UXB4 293 aa9.8□□□□□ -0.84
VPS39-213ENST00000570062 FAM196AQ6ZSG2 479 aa9.8□□□□□ -0.84
VPS39-213ENST00000570062 IL27Q8NEV9 243 aa9.8□□□□□ -0.84
VPS39-213ENST00000570062 RYDENQ9NUL5 291 aaKnown RBP9.8□□□□□ -0.84
VPS39-213ENST00000570062 PLA2G2EQ9NZK7 142 aa9.8□□□□□ -0.84
VPS39-213ENST00000570062 UBR2Q8IWV8 1755 aa9.8□□□□□ -0.84
VPS39-213ENST00000570062 SHANK3Q9BYB0 1731 aa9.79□□□□□ -0.84
VPS39-213ENST00000570062 PNMA6EA0A0J9YXQ4 647 aa9.79□□□□□ -0.84
VPS39-213ENST00000570062 PCCAP05165 728 aaPredicted RBP9.79□□□□□ -0.84
VPS39-213ENST00000570062 OS9Q13438 667 aaPredicted RBP9.79□□□□□ -0.84
VPS39-213ENST00000570062 C8orf34Q49A92 452 aa9.79□□□□□ -0.84
VPS39-213ENST00000570062 PARP10Q53GL7 1025 aa9.79□□□□□ -0.84
VPS39-213ENST00000570062 TICAM2Q86XR7 235 aa9.79□□□□□ -0.84
VPS39-213ENST00000570062 COPRSQ9NQ92 184 aa9.79□□□□□ -0.84
VPS39-213ENST00000570062 STAP2Q9UGK3 403 aa9.79□□□□□ -0.84
VPS39-213ENST00000570062 LAMB4A4D0S4 1761 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 ERC2O15083 957 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 RBM6P78332 1123 aaKnown RBP9.78□□□□□ -0.84
VPS39-213ENST00000570062 TTLL7Q6ZT98 887 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 DZIP3Q86Y13 1208 aaKnown RBP9.78□□□□□ -0.84
VPS39-213ENST00000570062 PLEKHM2Q8IWE5 1019 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 SEPT12Q8IYM1 358 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 ZBTB38Q8NAP3 1195 aaPredicted RBP9.78□□□□□ -0.84
VPS39-213ENST00000570062 RHPN1Q8TCX5 695 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 ACSBG1Q96GR2 724 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 PLA2G12BQ9BX93 195 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 TTC41PQ6P2S7 1318 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 CDHR2Q9BYE9 1310 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 CNTNAP4Q9C0A0 1308 aa9.78□□□□□ -0.84
VPS39-213ENST00000570062 N4BP2Q86UW6 1770 aaPredicted RBP9.78□□□□□ -0.84
VPS39-213ENST00000570062 WNK3Q9BYP7 1800 aa9.77□□□□□ -0.84
VPS39-213ENST00000570062 EPB41L2O43491 1005 aaKnown RBP9.77□□□□□ -0.85
VPS39-213ENST00000570062 CDC45O75419 566 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 MX1P20591 662 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 TTC22Q5TAA0 569 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 OXER1Q8TDS5 423 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 SUCLG2Q96I99 432 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 ARXQ96QS3 562 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 KCNK17Q96T54 332 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 ZBTB3Q9H5J0 574 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 BICC1Q9H694 974 aaKnown RBP9.77□□□□□ -0.85
VPS39-213ENST00000570062 EXOC6BQ9Y2D4 811 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 VIRMAQ69YN4 1812 aaKnown RBP9.77□□□□□ -0.85
VPS39-213ENST00000570062 EP400Q96L91 3159 aa9.77□□□□□ -0.85
VPS39-213ENST00000570062 ATP5J2-PTCD1G3V325 749 aa9.76□□□□□ -0.85
VPS39-213ENST00000570062 IFIT2P09913 472 aaKnown RBP9.76□□□□□ -0.85
VPS39-213ENST00000570062 CRKLP46109 303 aaKnown RBP9.76□□□□□ -0.85
VPS39-213ENST00000570062 PDE1AP54750 535 aa9.76□□□□□ -0.85
VPS39-213ENST00000570062 CASP7P55210 303 aa9.76□□□□□ -0.85
VPS39-213ENST00000570062 SLC27A3Q5K4L6 730 aa9.76□□□□□ -0.85
VPS39-213ENST00000570062 INTS5Q6P9B9 1019 aaKnown RBP9.76□□□□□ -0.85
VPS39-213ENST00000570062 UBE3BQ7Z3V4 1068 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms