RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 PLA2G12BQ9BX93 195 aa12.58□□□□□ -0.4
CLN3-220ENST00000566040 SEC31BQ9NQW1 1179 aa12.58□□□□□ -0.4
CLN3-220ENST00000566040 UTYO14607 1347 aa12.58□□□□□ -0.4
CLN3-220ENST00000566040 PTPRCP08575 1304 aa12.58□□□□□ -0.4
CLN3-220ENST00000566040 NPHP1O15259 732 aa12.57□□□□□ -0.4
CLN3-220ENST00000566040 GTF2E1P29083 439 aaPredicted RBP12.57□□□□□ -0.4
CLN3-220ENST00000566040 FOXO4P98177 505 aa12.57□□□□□ -0.4
CLN3-220ENST00000566040 ARHGAP27Q6ZUM4 889 aa12.57□□□□□ -0.4
CLN3-220ENST00000566040 NLRP3Q96P20 1036 aa12.57□□□□□ -0.4
CLN3-220ENST00000566040 SMC4Q9NTJ3 1288 aa12.57□□□□□ -0.4
CLN3-220ENST00000566040 YY1P25490 414 aa12.56□□□□□ -0.4
CLN3-220ENST00000566040 TTLL11Q8NHH1 800 aa12.56□□□□□ -0.4
CLN3-220ENST00000566040 NOB1Q9ULX3 412 aaKnown RBP12.56□□□□□ -0.4
CLN3-220ENST00000566040 ADAMTSL1Q8N6G6 1762 aa12.56□□□□□ -0.4
CLN3-220ENST00000566040 PPEF1O14829 653 aaPredicted RBP12.55□□□□□ -0.4
CLN3-220ENST00000566040 PDE8AO60658 829 aa12.55□□□□□ -0.4
CLN3-220ENST00000566040 CSF1RP07333 972 aa12.55□□□□□ -0.4
CLN3-220ENST00000566040 NBPF7P0C2Y1 421 aaPredicted RBP12.55□□□□□ -0.4
CLN3-220ENST00000566040 CTSWP56202 376 aa12.55□□□□□ -0.4
CLN3-220ENST00000566040 GRAPQ13588 217 aa12.55□□□□□ -0.4
CLN3-220ENST00000566040 C9orf131Q5VYM1 1079 aa12.55□□□□□ -0.4
CLN3-220ENST00000566040 ZNF784Q8NCA9 323 aaPredicted RBP12.55□□□□□ -0.4
CLN3-220ENST00000566040 GRAPLQ8TC17 118 aaPredicted RBP12.55□□□□□ -0.4
CLN3-220ENST00000566040 RPGRQ92834 1020 aaKnown RBP12.55□□□□□ -0.4
CLN3-220ENST00000566040 ALDH1L1O75891 902 aa12.54□□□□□ -0.4
CLN3-220ENST00000566040 ALDH1B1P30837 517 aa12.54□□□□□ -0.4
CLN3-220ENST00000566040 NEXNQ0ZGT2 675 aa12.54□□□□□ -0.4
CLN3-220ENST00000566040 ANKRD44Q8N8A2 993 aa12.54□□□□□ -0.4
CLN3-220ENST00000566040 RBM17Q96I25 401 aaKnown RBP12.54□□□□□ -0.4
CLN3-220ENST00000566040 CCDC85AQ96PX6 553 aaPredicted RBP12.54□□□□□ -0.4
CLN3-220ENST00000566040 GREM2Q9H772 168 aa12.54□□□□□ -0.4
CLN3-220ENST00000566040 ATP6V0A2Q9Y487 856 aa12.54□□□□□ -0.4
CLN3-220ENST00000566040 WTIPA6NIX2 430 aaPredicted RBP12.53□□□□□ -0.4
CLN3-220ENST00000566040 GRM8O00222 908 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 TRIM27P14373 513 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 FAM161AQ3B820 660 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 CCDC93Q567U6 631 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 SUCLG2Q96I99 432 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 SRCIN1Q9C0H9 1055 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 USP44Q9H0E7 712 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 ARAP2Q8WZ64 1704 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 SCN4AP35499 1836 aa12.53□□□□□ -0.4
CLN3-220ENST00000566040 RLBP1P12271 317 aa12.52□□□□□ -0.41
CLN3-220ENST00000566040 FKBP4Q02790 459 aaKnown RBP eCLIP12.52□□□□□ -0.41
CLN3-220ENST00000566040 SLC4A10Q6U841 1118 aa12.52□□□□□ -0.41
CLN3-220ENST00000566040 PSMD1Q99460 953 aa12.52□□□□□ -0.41
CLN3-220ENST00000566040 RTFDC1Q9BY42 306 aaPredicted RBP12.52□□□□□ -0.41
CLN3-220ENST00000566040 TAOK3Q9H2K8 898 aa12.52□□□□□ -0.41
CLN3-220ENST00000566040 RNF181Q9P0P0 153 aa12.52□□□□□ -0.41
CLN3-220ENST00000566040 DCAF8L1A6NGE4 600 aa12.51□□□□□ -0.41
CLN3-220ENST00000566040 LMNB1P20700 586 aa12.51□□□□□ -0.41
CLN3-220ENST00000566040 RABL6Q3YEC7 729 aaPredicted RBP12.51□□□□□ -0.41
CLN3-220ENST00000566040 DDX46Q7L014 1031 aaKnown RBP12.51□□□□□ -0.41
CLN3-220ENST00000566040 SP8Q8IXZ3 490 aa12.51□□□□□ -0.41
CLN3-220ENST00000566040 ARHGAP45Q92619 1136 aa12.51□□□□□ -0.41
CLN3-220ENST00000566040 ZNF277Q9NRM2 450 aaPredicted RBP12.51□□□□□ -0.41
CLN3-220ENST00000566040 KIF16BQ96L93 1317 aa12.51□□□□□ -0.41
CLN3-220ENST00000566040 IRS2Q9Y4H2 1338 aa12.51□□□□□ -0.41
CLN3-220ENST00000566040 POTECB2RU33 542 aa12.5□□□□□ -0.41
CLN3-220ENST00000566040 BBOX1O75936 387 aa12.5□□□□□ -0.41
CLN3-220ENST00000566040 GPSM2P81274 684 aa12.5□□□□□ -0.41
CLN3-220ENST00000566040 INTS3Q68E01 1043 aaKnown RBP12.5□□□□□ -0.41
CLN3-220ENST00000566040 ZNF541Q9H0D2 1346 aa12.5□□□□□ -0.41
CLN3-220ENST00000566040 RPS8P62241 208 aaKnown RBP12.49□□□□□ -0.41
CLN3-220ENST00000566040 CCDC152Q4G0S7 254 aa12.49□□□□□ -0.41
CLN3-220ENST00000566040 SOGA3Q5TF21 947 aa12.49□□□□□ -0.41
CLN3-220ENST00000566040 GPR101Q96P66 508 aaPredicted RBP12.49□□□□□ -0.41
CLN3-220ENST00000566040 MEIS3Q99687 375 aa12.49□□□□□ -0.41
CLN3-220ENST00000566040 BICC1Q9H694 974 aaKnown RBP12.49□□□□□ -0.41
CLN3-220ENST00000566040 POLLQ9UGP5 575 aa12.49□□□□□ -0.41
CLN3-220ENST00000566040 MYH13Q9UKX3 1938 aa12.49□□□□□ -0.41
CLN3-220ENST00000566040 ZC3H4Q9UPT8 1303 aaKnown RBP12.48□□□□□ -0.41
CLN3-220ENST00000566040 ITGA6P23229 1130 aa12.48□□□□□ -0.41
CLN3-220ENST00000566040 IARSP41252 1262 aaKnown RBP12.48□□□□□ -0.41
CLN3-220ENST00000566040 RFX5P48382 616 aaPredicted RBP12.48□□□□□ -0.41
CLN3-220ENST00000566040 CC2D2BQ6DHV5 1058 aa12.48□□□□□ -0.41
CLN3-220ENST00000566040 LMBR1LQ6UX01 489 aa12.48□□□□□ -0.41
CLN3-220ENST00000566040 ATF7IPQ6VMQ6 1270 aa12.48□□□□□ -0.41
CLN3-220ENST00000566040 RTKN2Q8IZC4 609 aa12.48□□□□□ -0.41
CLN3-220ENST00000566040 FZD9O00144 591 aa12.47□□□□□ -0.41
CLN3-220ENST00000566040 KIF3CO14782 793 aa12.47□□□□□ -0.41
CLN3-220ENST00000566040 ZNF594Q96JF6 807 aaPredicted RBP12.47□□□□□ -0.41
CLN3-220ENST00000566040 API5Q9BZZ5 524 aaKnown RBP12.47□□□□□ -0.41
CLN3-220ENST00000566040 NMRK2Q9NPI5 230 aa12.47□□□□□ -0.41
CLN3-220ENST00000566040 PODXL2Q9NZ53 605 aa12.47□□□□□ -0.41
CLN3-220ENST00000566040 YDJCA8MPS7 323 aa12.46□□□□□ -0.41
CLN3-220ENST00000566040 KLRK1P26718 216 aa12.46□□□□□ -0.41
CLN3-220ENST00000566040 CCT4P50991 539 aaKnown RBP12.46□□□□□ -0.41
CLN3-220ENST00000566040 AOC3Q16853 763 aa12.46□□□□□ -0.41
CLN3-220ENST00000566040 TMC4Q7Z404 712 aa12.46□□□□□ -0.41
CLN3-220ENST00000566040 TMEM57Q8N5G2 664 aa12.46□□□□□ -0.41
CLN3-220ENST00000566040 MINPP1Q9UNW1 487 aa12.46□□□□□ -0.41
CLN3-220ENST00000566040 SNAP23O00161 211 aa12.45□□□□□ -0.42
CLN3-220ENST00000566040 KIAA2012Q0VF49 1180 aa12.45□□□□□ -0.42
CLN3-220ENST00000566040 MPNDQ8N594 471 aa12.45□□□□□ -0.42
CLN3-220ENST00000566040 TBC1D16Q8TBP0 767 aa12.45□□□□□ -0.42
CLN3-220ENST00000566040 CLUAP1Q96AJ1 413 aa12.45□□□□□ -0.42
CLN3-220ENST00000566040 PUS3Q9BZE2 481 aaKnown RBP12.45□□□□□ -0.42
CLN3-220ENST00000566040 BSDC1Q9NW68 430 aaPredicted RBP12.45□□□□□ -0.42
CLN3-220ENST00000566040 C9orf78Q9NZ63 289 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms