RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CHMP4AQ9BY43 222 aa24.26■■□□□ 1.47
CLN3-218ENST00000565688 ZNRF3Q9ULT6 936 aa24.26■■□□□ 1.47
CLN3-218ENST00000565688 CNTNAP1P78357 1384 aa24.26■■□□□ 1.47
CLN3-218ENST00000565688 ATP5J2-PTCD1G3V325 749 aa24.25■■□□□ 1.47
CLN3-218ENST00000565688 MAP1SQ66K74 1059 aaPredicted RBP24.25■■□□□ 1.47
CLN3-218ENST00000565688 GOLGA2Q08379 1002 aa24.24■■□□□ 1.47
CLN3-218ENST00000565688 COL13A1Q5TAT6 717 aaPredicted RBP24.24■■□□□ 1.47
CLN3-218ENST00000565688 FAM89AQ96GI7 184 aa24.24■■□□□ 1.47
CLN3-218ENST00000565688 EPS15P42566 896 aa24.23■■□□□ 1.47
CLN3-218ENST00000565688 KIAA2012Q0VF49 1180 aa24.23■■□□□ 1.47
CLN3-218ENST00000565688 SF3B3Q15393 1217 aaKnown RBP24.23■■□□□ 1.47
CLN3-218ENST00000565688 USP50Q70EL3 339 aaPredicted RBP24.23■■□□□ 1.47
CLN3-218ENST00000565688 RIC3Q7Z5B4 369 aa24.23■■□□□ 1.47
CLN3-218ENST00000565688 LTBP1Q14766 1721 aa24.21■■□□□ 1.47
CLN3-218ENST00000565688 DDX60Q8IY21 1712 aaKnown RBP24.21■■□□□ 1.47
CLN3-218ENST00000565688 HSP90B1P14625 803 aaKnown RBP24.21■■□□□ 1.47
CLN3-218ENST00000565688 CXCL9Q07325 125 aa24.21■■□□□ 1.47
CLN3-218ENST00000565688 ZNF428Q96B54 188 aa24.21■■□□□ 1.47
CLN3-218ENST00000565688 ELL2O00472 640 aaPredicted RBP24.2■■□□□ 1.46
CLN3-218ENST00000565688 GPRC5DQ9NZD1 345 aa24.2■■□□□ 1.46
CLN3-218ENST00000565688 CDHR2Q9BYE9 1310 aa24.19■■□□□ 1.46
CLN3-218ENST00000565688 IRS4O14654 1257 aaPredicted RBP24.19■■□□□ 1.46
CLN3-218ENST00000565688 TNIP1Q15025 636 aa24.19■■□□□ 1.46
CLN3-218ENST00000565688 ADARB2Q9NS39 739 aaKnown RBP24.19■■□□□ 1.46
CLN3-218ENST00000565688 LRRC37AA6NMS7 1700 aa24.18■■□□□ 1.46
CLN3-218ENST00000565688 CCDC30Q5VVM6 783 aa24.18■■□□□ 1.46
CLN3-218ENST00000565688 CIAPIN1Q6FI81 312 aa24.18■■□□□ 1.46
CLN3-218ENST00000565688 ZBTB38Q8NAP3 1195 aaPredicted RBP24.18■■□□□ 1.46
CLN3-218ENST00000565688 C8orf58Q8NAV2 365 aa24.18■■□□□ 1.46
CLN3-218ENST00000565688 PHAXQ9H814 394 aaKnown RBP24.18■■□□□ 1.46
CLN3-218ENST00000565688 DDX58O95786 925 aaKnown RBP24.17■■□□□ 1.46
CLN3-218ENST00000565688 RTL5Q5HYW3 569 aaPredicted RBP24.17■■□□□ 1.46
CLN3-218ENST00000565688 CELF1Q92879 486 aaKnown RBP24.17■■□□□ 1.46
CLN3-218ENST00000565688 TAF1P21675 1872 aa24.16■■□□□ 1.46
CLN3-218ENST00000565688 RASSF10A6NK89 507 aa24.16■■□□□ 1.46
CLN3-218ENST00000565688 VEGFBP49765 207 aa24.16■■□□□ 1.46
CLN3-218ENST00000565688 GMPSP49915 693 aaPredicted RBP24.16■■□□□ 1.46
CLN3-218ENST00000565688 CCDC191Q8NCU4 936 aa24.16■■□□□ 1.46
CLN3-218ENST00000565688 RAD17O75943 681 aa24.15■■□□□ 1.46
CLN3-218ENST00000565688 WASHC4Q2M389 1173 aa24.15■■□□□ 1.46
CLN3-218ENST00000565688 TNS4Q8IZW8 715 aa24.15■■□□□ 1.46
CLN3-218ENST00000565688 MYD88Q99836 296 aa24.15■■□□□ 1.46
CLN3-218ENST00000565688 BCL2L13Q9BXK5 485 aa24.15■■□□□ 1.46
CLN3-218ENST00000565688 NSFL1CQ9UNZ2 370 aaKnown RBP24.15■■□□□ 1.46
CLN3-218ENST00000565688 DUOX1Q9NRD9 1551 aa24.15■■□□□ 1.46
CLN3-218ENST00000565688 RPS8P62241 208 aaKnown RBP24.14■■□□□ 1.45
CLN3-218ENST00000565688 CCDC27Q2M243 656 aa24.14■■□□□ 1.45
CLN3-218ENST00000565688 DEFB115Q30KQ5 88 aa24.14■■□□□ 1.45
CLN3-218ENST00000565688 ABT1Q9ULW3 272 aaKnown RBP24.14■■□□□ 1.45
CLN3-218ENST00000565688 PCCAP05165 728 aaPredicted RBP24.13■■□□□ 1.45
CLN3-218ENST00000565688 CWC25Q9NXE8 425 aaPredicted RBP24.13■■□□□ 1.45
CLN3-218ENST00000565688 C6orf229H3BNL8 230 aa24.12■■□□□ 1.45
CLN3-218ENST00000565688 AIDAQ96BJ3 306 aa24.12■■□□□ 1.45
CLN3-218ENST00000565688 EYA3Q99504 573 aa24.12■■□□□ 1.45
CLN3-218ENST00000565688 METTL22Q9BUU2 404 aaPredicted RBP24.12■■□□□ 1.45
CLN3-218ENST00000565688 YDJCA8MPS7 323 aa24.11■■□□□ 1.45
CLN3-218ENST00000565688 ZEB1P37275 1124 aaPredicted RBP24.11■■□□□ 1.45
CLN3-218ENST00000565688 GPSM2P81274 684 aa24.11■■□□□ 1.45
CLN3-218ENST00000565688 CCDC152Q4G0S7 254 aa24.11■■□□□ 1.45
CLN3-218ENST00000565688 CCDC184Q52MB2 194 aa24.11■■□□□ 1.45
CLN3-218ENST00000565688 NCBP3Q53F19 620 aaKnown RBP24.1■■□□□ 1.45
CLN3-218ENST00000565688 TSPYL6Q8N831 410 aa24.1■■□□□ 1.45
CLN3-218ENST00000565688 ZC3H15Q8WU90 426 aaKnown RBP24.1■■□□□ 1.45
CLN3-218ENST00000565688 STK31Q9BXU1 1019 aa24.1■■□□□ 1.45
CLN3-218ENST00000565688 POLLQ9UGP5 575 aa24.1■■□□□ 1.45
CLN3-218ENST00000565688 PDE8AO60658 829 aa24.09■■□□□ 1.45
CLN3-218ENST00000565688 WWC1Q8IX03 1113 aa24.09■■□□□ 1.45
CLN3-218ENST00000565688 TSR2Q969E8 191 aaKnown RBP24.09■■□□□ 1.45
CLN3-218ENST00000565688 PGAP2Q9UHJ9 254 aa24.09■■□□□ 1.45
CLN3-218ENST00000565688 CNOT7Q9UIV1 285 aaKnown RBP24.09■■□□□ 1.45
CLN3-218ENST00000565688 H7C1D1 291 aa24.08■■□□□ 1.45
CLN3-218ENST00000565688 TRAF5O00463 557 aa24.08■■□□□ 1.45
CLN3-218ENST00000565688 KSR2Q6VAB6 950 aa24.08■■□□□ 1.45
CLN3-218ENST00000565688 TBC1D16Q8TBP0 767 aa24.08■■□□□ 1.45
CLN3-218ENST00000565688 DPF2Q92785 391 aa24.08■■□□□ 1.45
CLN3-218ENST00000565688 PODXL2Q9NZ53 605 aa24.08■■□□□ 1.45
CLN3-218ENST00000565688 MAP3K2Q9Y2U5 619 aa24.08■■□□□ 1.45
CLN3-218ENST00000565688 IL16Q14005 1332 aa24.08■■□□□ 1.44
CLN3-218ENST00000565688 WDR33Q9C0J8 1336 aaKnown RBP24.08■■□□□ 1.44
CLN3-218ENST00000565688 RIMBP2O15034 1052 aa24.07■■□□□ 1.44
CLN3-218ENST00000565688 FOXN1O15353 648 aa24.07■■□□□ 1.44
CLN3-218ENST00000565688 DBNDD1Q9H9R9 158 aa24.07■■□□□ 1.44
CLN3-218ENST00000565688 SEC31BQ9NQW1 1179 aa24.07■■□□□ 1.44
CLN3-218ENST00000565688 WBP1LQ9NX94 342 aa24.07■■□□□ 1.44
CLN3-218ENST00000565688 COL4A1P02462 1669 aa24.06■■□□□ 1.44
CLN3-218ENST00000565688 PI4KAP2A4QPH2 592 aa24.06■■□□□ 1.44
CLN3-218ENST00000565688 CTCFP49711 727 aaPredicted RBP24.06■■□□□ 1.44
CLN3-218ENST00000565688 FMR1Q06787 632 aaKnown RBP eCLIP24.06■■□□□ 1.44
CLN3-218ENST00000565688 NEXNQ0ZGT2 675 aa24.06■■□□□ 1.44
CLN3-218ENST00000565688 CST9Q5W186 159 aa24.06■■□□□ 1.44
CLN3-218ENST00000565688 PI4KAP1Q8N8J0 262 aa24.06■■□□□ 1.44
CLN3-218ENST00000565688 TRPM7Q96QT4 1865 aa24.06■■□□□ 1.44
CLN3-218ENST00000565688 PSMD14O00487 310 aa24.05■■□□□ 1.44
CLN3-218ENST00000565688 ECE2O60344 883 aa24.05■■□□□ 1.44
CLN3-218ENST00000565688 RPS12P25398 132 aaKnown RBP24.05■■□□□ 1.44
CLN3-218ENST00000565688 ECE1P42892 770 aa24.05■■□□□ 1.44
CLN3-218ENST00000565688 MAP2K1Q02750 393 aaPredicted RBP24.05■■□□□ 1.44
CLN3-218ENST00000565688 TWISTNBQ3B726 338 aaPredicted RBP24.05■■□□□ 1.44
CLN3-218ENST00000565688 MICALL2Q8IY33 904 aa24.05■■□□□ 1.44
CLN3-218ENST00000565688 ZC3H12CQ9C0D7 883 aaKnown RBP24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms