RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DPP8Q6V1X1 898 aaPredicted RBP22.25■■□□□ 1.15
CLN3-216ENST00000565316 TMC4Q7Z404 712 aa22.25■■□□□ 1.15
CLN3-216ENST00000565316 MPNDQ8N594 471 aa22.25■■□□□ 1.15
CLN3-216ENST00000565316 ZNRF3Q9ULT6 936 aa22.25■■□□□ 1.15
CLN3-216ENST00000565316 GNAI1P63096 354 aa22.23■■□□□ 1.15
CLN3-216ENST00000565316 CALD1Q05682 793 aaKnown RBP22.23■■□□□ 1.15
CLN3-216ENST00000565316 CXCL9Q07325 125 aa22.23■■□□□ 1.15
CLN3-216ENST00000565316 KIAA2012Q0VF49 1180 aa22.23■■□□□ 1.15
CLN3-216ENST00000565316 SF3B3Q15393 1217 aaKnown RBP22.23■■□□□ 1.15
CLN3-216ENST00000565316 USP50Q70EL3 339 aaPredicted RBP22.23■■□□□ 1.15
CLN3-216ENST00000565316 ATP5J2-PTCD1G3V325 749 aa22.22■■□□□ 1.15
CLN3-216ENST00000565316 FAM89AQ96GI7 184 aa22.22■■□□□ 1.15
CLN3-216ENST00000565316 VEGFBP49765 207 aa22.21■■□□□ 1.15
CLN3-216ENST00000565316 ZNF428Q96B54 188 aa22.21■■□□□ 1.15
CLN3-216ENST00000565316 GPRC5DQ9NZD1 345 aa22.21■■□□□ 1.15
CLN3-216ENST00000565316 DDX60Q8IY21 1712 aaKnown RBP22.2■■□□□ 1.15
CLN3-216ENST00000565316 RASSF10A6NK89 507 aa22.2■■□□□ 1.14
CLN3-216ENST00000565316 ADARB2Q9NS39 739 aaKnown RBP22.19■■□□□ 1.14
CLN3-216ENST00000565316 DUOX1Q9NRD9 1551 aa22.19■■□□□ 1.14
CLN3-216ENST00000565316 TNS4Q8IZW8 715 aa22.18■■□□□ 1.14
CLN3-216ENST00000565316 LRRC37AA6NMS7 1700 aa22.18■■□□□ 1.14
CLN3-216ENST00000565316 GMPSP49915 693 aaPredicted RBP22.17■■□□□ 1.14
CLN3-216ENST00000565316 GOLGA2Q08379 1002 aa22.17■■□□□ 1.14
CLN3-216ENST00000565316 CIAPIN1Q6FI81 312 aa22.17■■□□□ 1.14
CLN3-216ENST00000565316 RIC3Q7Z5B4 369 aa22.17■■□□□ 1.14
CLN3-216ENST00000565316 C8orf58Q8NAV2 365 aa22.17■■□□□ 1.14
CLN3-216ENST00000565316 CELF1Q92879 486 aaKnown RBP22.17■■□□□ 1.14
CLN3-216ENST00000565316 PHAXQ9H814 394 aaKnown RBP22.17■■□□□ 1.14
CLN3-216ENST00000565316 CDHR2Q9BYE9 1310 aa22.17■■□□□ 1.14
CLN3-216ENST00000565316 TAF1P21675 1872 aa22.16■■□□□ 1.14
CLN3-216ENST00000565316 IRS4O14654 1257 aaPredicted RBP22.16■■□□□ 1.14
CLN3-216ENST00000565316 TNIP1Q15025 636 aa22.16■■□□□ 1.14
CLN3-216ENST00000565316 DEFB115Q30KQ5 88 aa22.16■■□□□ 1.14
CLN3-216ENST00000565316 YDJCA8MPS7 323 aa22.15■■□□□ 1.14
CLN3-216ENST00000565316 ELL2O00472 640 aaPredicted RBP22.15■■□□□ 1.14
CLN3-216ENST00000565316 ZBTB38Q8NAP3 1195 aaPredicted RBP22.15■■□□□ 1.14
CLN3-216ENST00000565316 RAD17O75943 681 aa22.14■■□□□ 1.14
CLN3-216ENST00000565316 RTL5Q5HYW3 569 aaPredicted RBP22.14■■□□□ 1.14
CLN3-216ENST00000565316 CHMP4AQ9BY43 222 aa22.14■■□□□ 1.14
CLN3-216ENST00000565316 PGAP2Q9UHJ9 254 aa22.14■■□□□ 1.14
CLN3-216ENST00000565316 FOXN1O15353 648 aa22.13■■□□□ 1.13
CLN3-216ENST00000565316 FMR1Q06787 632 aaKnown RBP eCLIP22.13■■□□□ 1.13
CLN3-216ENST00000565316 CCDC191Q8NCU4 936 aa22.13■■□□□ 1.13
CLN3-216ENST00000565316 WBP1LQ9NX94 342 aa22.13■■□□□ 1.13
CLN3-216ENST00000565316 COL4A1P02462 1669 aa22.13■■□□□ 1.13
CLN3-216ENST00000565316 HSP90B1P14625 803 aaKnown RBP22.12■■□□□ 1.13
CLN3-216ENST00000565316 RPS8P62241 208 aaKnown RBP22.12■■□□□ 1.13
CLN3-216ENST00000565316 WASHC4Q2M389 1173 aa22.12■■□□□ 1.13
CLN3-216ENST00000565316 CST9Q5W186 159 aa22.12■■□□□ 1.13
CLN3-216ENST00000565316 MYD88Q99836 296 aa22.12■■□□□ 1.13
CLN3-216ENST00000565316 POLLQ9UGP5 575 aa22.12■■□□□ 1.13
CLN3-216ENST00000565316 ABT1Q9ULW3 272 aaKnown RBP22.12■■□□□ 1.13
CLN3-216ENST00000565316 NSFL1CQ9UNZ2 370 aaKnown RBP22.12■■□□□ 1.13
CLN3-216ENST00000565316 TRAF5O00463 557 aa22.11■■□□□ 1.13
CLN3-216ENST00000565316 GPSM2P81274 684 aa22.11■■□□□ 1.13
CLN3-216ENST00000565316 CCDC27Q2M243 656 aa22.11■■□□□ 1.13
CLN3-216ENST00000565316 CCDC184Q52MB2 194 aa22.11■■□□□ 1.13
CLN3-216ENST00000565316 CCDC30Q5VVM6 783 aa22.11■■□□□ 1.13
CLN3-216ENST00000565316 ZC3H15Q8WU90 426 aaKnown RBP22.11■■□□□ 1.13
CLN3-216ENST00000565316 BCL2L13Q9BXK5 485 aa22.11■■□□□ 1.13
CLN3-216ENST00000565316 WDR33Q9C0J8 1336 aaKnown RBP22.11■■□□□ 1.13
CLN3-216ENST00000565316 PCCAP05165 728 aaPredicted RBP22.1■■□□□ 1.13
CLN3-216ENST00000565316 HIRAP54198 1017 aaPredicted RBP22.1■■□□□ 1.13
CLN3-216ENST00000565316 TSPYL6Q8N831 410 aa22.1■■□□□ 1.13
CLN3-216ENST00000565316 METTL22Q9BUU2 404 aaPredicted RBP22.1■■□□□ 1.13
CLN3-216ENST00000565316 PRDM10Q9NQV6 1147 aa22.1■■□□□ 1.13
CLN3-216ENST00000565316 DDX58O95786 925 aaKnown RBP22.09■■□□□ 1.13
CLN3-216ENST00000565316 AIDAQ96BJ3 306 aa22.09■■□□□ 1.13
CLN3-216ENST00000565316 CWC25Q9NXE8 425 aaPredicted RBP22.09■■□□□ 1.13
CLN3-216ENST00000565316 CNOT7Q9UIV1 285 aaKnown RBP22.09■■□□□ 1.13
CLN3-216ENST00000565316 C6orf229H3BNL8 230 aa22.08■■□□□ 1.13
CLN3-216ENST00000565316 CTCFP49711 727 aaPredicted RBP22.08■■□□□ 1.13
CLN3-216ENST00000565316 TBC1D16Q8TBP0 767 aa22.08■■□□□ 1.13
CLN3-216ENST00000565316 DPF2Q92785 391 aa22.08■■□□□ 1.13
CLN3-216ENST00000565316 EYA3Q99504 573 aa22.08■■□□□ 1.13
CLN3-216ENST00000565316 SEC31BQ9NQW1 1179 aa22.08■■□□□ 1.13
CLN3-216ENST00000565316 PODXL2Q9NZ53 605 aa22.08■■□□□ 1.13
CLN3-216ENST00000565316 PSMD14O00487 310 aa22.07■■□□□ 1.12
CLN3-216ENST00000565316 NCBP3Q53F19 620 aaKnown RBP22.07■■□□□ 1.12
CLN3-216ENST00000565316 TRPM4Q8TD43 1214 aa22.07■■□□□ 1.12
CLN3-216ENST00000565316 DBNDD1Q9H9R9 158 aa22.07■■□□□ 1.12
CLN3-216ENST00000565316 TLL2Q9Y6L7 1015 aa22.07■■□□□ 1.12
CLN3-216ENST00000565316 SHTN1A0MZ66 631 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 PDE8AO60658 829 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 CCDC152Q4G0S7 254 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 WWC1Q8IX03 1113 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 TSR2Q969E8 191 aaKnown RBP22.06■■□□□ 1.12
CLN3-216ENST00000565316 TRPM7Q96QT4 1865 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 H7C1D1 291 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 RIMBP2O15034 1052 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 MAP2K1Q02750 393 aaPredicted RBP22.06■■□□□ 1.12
CLN3-216ENST00000565316 KSR2Q6VAB6 950 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 MICALL2Q8IY33 904 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 CAPNS2Q96L46 248 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 GLIS2Q9BZE0 524 aaPredicted RBP22.06■■□□□ 1.12
CLN3-216ENST00000565316 MAP3K2Q9Y2U5 619 aa22.06■■□□□ 1.12
CLN3-216ENST00000565316 ZBTB12Q9Y330 459 aaPredicted RBP22.06■■□□□ 1.12
CLN3-216ENST00000565316 ECE2O60344 883 aa22.05■■□□□ 1.12
CLN3-216ENST00000565316 IGKV5-2P06315 115 aa22.05■■□□□ 1.12
CLN3-216ENST00000565316 RPS12P25398 132 aaKnown RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms