RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 IRS4O14654 1257 aaPredicted RBP19.17■□□□□ 0.66
CLN3-213ENST00000565047 VAMP4O75379 141 aa19.17■□□□□ 0.66
CLN3-213ENST00000565047 IGKV5-2P06315 115 aa19.17■□□□□ 0.66
CLN3-213ENST00000565047 RTL5Q5HYW3 569 aaPredicted RBP19.17■□□□□ 0.66
CLN3-213ENST00000565047 CELF1Q92879 486 aaKnown RBP19.17■□□□□ 0.66
CLN3-213ENST00000565047 DUOX1Q9NRD9 1551 aa19.17■□□□□ 0.66
CLN3-213ENST00000565047 LRRC37AA6NMS7 1700 aa19.17■□□□□ 0.66
CLN3-213ENST00000565047 PI4KAP2A4QPH2 592 aa19.16■□□□□ 0.66
CLN3-213ENST00000565047 IQCA1LA6NCM1 817 aa19.16■□□□□ 0.66
CLN3-213ENST00000565047 PCCAP05165 728 aaPredicted RBP19.16■□□□□ 0.66
CLN3-213ENST00000565047 LARGE2Q8N3Y3 721 aa19.16■□□□□ 0.66
CLN3-213ENST00000565047 PI4KAP1Q8N8J0 262 aa19.16■□□□□ 0.66
CLN3-213ENST00000565047 JDP2Q8WYK2 163 aa19.16■□□□□ 0.66
CLN3-213ENST00000565047 MAP3K2Q9Y2U5 619 aa19.16■□□□□ 0.66
CLN3-213ENST00000565047 SALL2Q9Y467 1007 aaPredicted RBP19.16■□□□□ 0.66
CLN3-213ENST00000565047 ADAMTSL1Q8N6G6 1762 aa19.16■□□□□ 0.66
CLN3-213ENST00000565047 DDX58O95786 925 aaKnown RBP19.15■□□□□ 0.66
CLN3-213ENST00000565047 CHADLQ6NUI6 762 aa19.15■□□□□ 0.66
CLN3-213ENST00000565047 TMC4Q7Z404 712 aa19.15■□□□□ 0.66
CLN3-213ENST00000565047 MPNDQ8N594 471 aa19.15■□□□□ 0.66
CLN3-213ENST00000565047 ZNF521Q96K83 1311 aa19.15■□□□□ 0.66
CLN3-213ENST00000565047 LTBP1Q14766 1721 aa19.14■□□□□ 0.66
CLN3-213ENST00000565047 SLC4A2P04920 1241 aa19.14■□□□□ 0.65
CLN3-213ENST00000565047 AOC3Q16853 763 aa19.14■□□□□ 0.65
CLN3-213ENST00000565047 FAM9BQ8IZU0 186 aa19.14■□□□□ 0.65
CLN3-213ENST00000565047 CWC25Q9NXE8 425 aaPredicted RBP19.14■□□□□ 0.65
CLN3-213ENST00000565047 PPIP5K2O43314 1243 aa19.13■□□□□ 0.65
CLN3-213ENST00000565047 KIAA2012Q0VF49 1180 aa19.13■□□□□ 0.65
CLN3-213ENST00000565047 DPP8Q6V1X1 898 aaPredicted RBP19.13■□□□□ 0.65
CLN3-213ENST00000565047 JARID2Q92833 1246 aaPredicted RBP19.13■□□□□ 0.65
CLN3-213ENST00000565047 HACL1Q9UJ83 578 aa19.13■□□□□ 0.65
CLN3-213ENST00000565047 EPHX2P34913 555 aa19.12■□□□□ 0.65
CLN3-213ENST00000565047 SCNN1DP51172 638 aa19.12■□□□□ 0.65
CLN3-213ENST00000565047 EIF6P56537 245 aaKnown RBP19.12■□□□□ 0.65
CLN3-213ENST00000565047 EXOSC9Q06265 439 aaKnown RBP19.12■□□□□ 0.65
CLN3-213ENST00000565047 LDHDQ86WU2 507 aa19.12■□□□□ 0.65
CLN3-213ENST00000565047 SUPT20HQ8NEM7 779 aa19.12■□□□□ 0.65
CLN3-213ENST00000565047 STK31Q9BXU1 1019 aa19.12■□□□□ 0.65
CLN3-213ENST00000565047 SEC31BQ9NQW1 1179 aa19.12■□□□□ 0.65
CLN3-213ENST00000565047 PCNTO95613 3336 aa19.12■□□□□ 0.65
CLN3-213ENST00000565047 PASKQ96RG2 1323 aa19.11■□□□□ 0.65
CLN3-213ENST00000565047 CDHR2Q9BYE9 1310 aa19.11■□□□□ 0.65
CLN3-213ENST00000565047 PDE8AO60658 829 aa19.11■□□□□ 0.65
CLN3-213ENST00000565047 ITGBL1O95965 494 aaPredicted RBP19.11■□□□□ 0.65
CLN3-213ENST00000565047 RPS8P62241 208 aaKnown RBP19.11■□□□□ 0.65
CLN3-213ENST00000565047 FLIIQ13045 1269 aa19.11■□□□□ 0.65
CLN3-213ENST00000565047 KLRG1Q96E93 195 aa19.11■□□□□ 0.65
CLN3-213ENST00000565047 TMX4Q9H1E5 349 aaPredicted RBP19.11■□□□□ 0.65
CLN3-213ENST00000565047 ZNRF3Q9ULT6 936 aa19.11■□□□□ 0.65
CLN3-213ENST00000565047 NEURL1BA8MQ27 555 aa19.1■□□□□ 0.65
CLN3-213ENST00000565047 CXCL9Q07325 125 aa19.1■□□□□ 0.65
CLN3-213ENST00000565047 CWF19L2Q2TBE0 894 aaKnown RBP19.1■□□□□ 0.65
CLN3-213ENST00000565047 NIM1KQ8IY84 436 aa19.1■□□□□ 0.65
CLN3-213ENST00000565047 JMYQ8N9B5 988 aa19.1■□□□□ 0.65
CLN3-213ENST00000565047 YDJCA8MPS7 323 aa19.09■□□□□ 0.65
CLN3-213ENST00000565047 H7C1W4 665 aa19.09■□□□□ 0.65
CLN3-213ENST00000565047 GPSM2P81274 684 aa19.09■□□□□ 0.65
CLN3-213ENST00000565047 POLLQ9UGP5 575 aa19.09■□□□□ 0.65
CLN3-213ENST00000565047 GJA3Q9Y6H8 435 aa19.09■□□□□ 0.65
CLN3-213ENST00000565047 HSP90B1P14625 803 aaKnown RBP19.08■□□□□ 0.64
CLN3-213ENST00000565047 EPS15P42566 896 aa19.08■□□□□ 0.64
CLN3-213ENST00000565047 CASP7P55210 303 aa19.08■□□□□ 0.64
CLN3-213ENST00000565047 PNMA8AQ86V59 439 aaPredicted RBP19.08■□□□□ 0.64
CLN3-213ENST00000565047 PODXL2Q9NZ53 605 aa19.08■□□□□ 0.64
CLN3-213ENST00000565047 CCDC152Q4G0S7 254 aa19.07■□□□□ 0.64
CLN3-213ENST00000565047 TTLL11Q8NHH1 800 aa19.07■□□□□ 0.64
CLN3-213ENST00000565047 NSFL1CQ9UNZ2 370 aaKnown RBP19.07■□□□□ 0.64
CLN3-213ENST00000565047 TBC1D16Q8TBP0 767 aa19.06■□□□□ 0.64
CLN3-213ENST00000565047 CACNA1FO60840 1977 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 CTSWP56202 376 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 NEXNQ0ZGT2 675 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 GCKRQ14397 625 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 EAPPQ56P03 285 aaPredicted RBP19.05■□□□□ 0.64
CLN3-213ENST00000565047 DNAAF4Q8WXU2 420 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 PLA2G12BQ9BX93 195 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 MYH16Q9H6N6 1097 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 GPRC5DQ9NZD1 345 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 RTL9Q8NET4 1388 aa19.05■□□□□ 0.64
CLN3-213ENST00000565047 WASHC4Q2M389 1173 aa19.04■□□□□ 0.64
CLN3-213ENST00000565047 LINS1Q8NG48 757 aa19.04■□□□□ 0.64
CLN3-213ENST00000565047 CCDC85AQ96PX6 553 aaPredicted RBP19.04■□□□□ 0.64
CLN3-213ENST00000565047 CREBZFQ9NS37 354 aa19.04■□□□□ 0.64
CLN3-213ENST00000565047 RAD17O75943 681 aa19.03■□□□□ 0.64
CLN3-213ENST00000565047 FKBP5Q13451 457 aaPredicted RBP19.03■□□□□ 0.64
CLN3-213ENST00000565047 MAP1SQ66K74 1059 aaPredicted RBP19.03■□□□□ 0.64
CLN3-213ENST00000565047 CIAPIN1Q6FI81 312 aa19.03■□□□□ 0.64
CLN3-213ENST00000565047 USP50Q70EL3 339 aaPredicted RBP19.03■□□□□ 0.64
CLN3-213ENST00000565047 CNTROBQ8N137 903 aa19.03■□□□□ 0.64
CLN3-213ENST00000565047 GREM2Q9H772 168 aa19.03■□□□□ 0.64
CLN3-213ENST00000565047 CSF1RP07333 972 aa19.02■□□□□ 0.64
CLN3-213ENST00000565047 GMPSP49915 693 aaPredicted RBP19.02■□□□□ 0.64
CLN3-213ENST00000565047 BEND3Q5T5X7 828 aa19.02■□□□□ 0.64
CLN3-213ENST00000565047 UBE3BQ7Z3V4 1068 aa19.02■□□□□ 0.64
CLN3-213ENST00000565047 GPR101Q96P66 508 aaPredicted RBP19.02■□□□□ 0.64
CLN3-213ENST00000565047 KCNQ5Q9NR82 932 aa19.02■□□□□ 0.64
CLN3-213ENST00000565047 F6X3S4 739 aa19.01■□□□□ 0.63
CLN3-213ENST00000565047 LMOD1P29536 600 aaPredicted RBP19.01■□□□□ 0.63
CLN3-213ENST00000565047 ADARB2Q9NS39 739 aaKnown RBP19.01■□□□□ 0.63
CLN3-213ENST00000565047 PGAP2Q9UHJ9 254 aa19.01■□□□□ 0.63
CLN3-213ENST00000565047 CLEC11AQ9Y240 323 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 266.2 ms