RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 DCAF8Q5TAQ9 597 aa16.19■□□□□ 0.18
SNX1-209ENST00000559961 USP50Q70EL3 339 aaPredicted RBP16.19■□□□□ 0.18
SNX1-209ENST00000559961 ISCA1Q9BUE6 129 aa16.19■□□□□ 0.18
SNX1-209ENST00000559961 RTFDC1Q9BY42 306 aaPredicted RBP16.19■□□□□ 0.18
SNX1-209ENST00000559961 MKRN1Q9UHC7 482 aaKnown RBP16.19■□□□□ 0.18
SNX1-209ENST00000559961 DICER1Q9UPY3 1922 aaKnown RBP16.19■□□□□ 0.18
SNX1-209ENST00000559961 CACNA1SQ13698 1873 aa16.18■□□□□ 0.18
SNX1-209ENST00000559961 CIAPIN1Q6FI81 312 aa16.18■□□□□ 0.18
SNX1-209ENST00000559961 ZNF428Q96B54 188 aa16.18■□□□□ 0.18
SNX1-209ENST00000559961 EYA3Q99504 573 aa16.18■□□□□ 0.18
SNX1-209ENST00000559961 MYD88Q99836 296 aa16.18■□□□□ 0.18
SNX1-209ENST00000559961 NSFL1CQ9UNZ2 370 aaKnown RBP16.18■□□□□ 0.18
SNX1-209ENST00000559961 C6orf229H3BNL8 230 aa16.17■□□□□ 0.18
SNX1-209ENST00000559961 KIAA2012Q0VF49 1180 aa16.17■□□□□ 0.18
SNX1-209ENST00000559961 NEXNQ0ZGT2 675 aa16.17■□□□□ 0.18
SNX1-209ENST00000559961 SF3B3Q15393 1217 aaKnown RBP16.17■□□□□ 0.18
SNX1-209ENST00000559961 WASHC4Q2M389 1173 aa16.17■□□□□ 0.18
SNX1-209ENST00000559961 MAP1SQ66K74 1059 aaPredicted RBP16.17■□□□□ 0.18
SNX1-209ENST00000559961 ZBTB38Q8NAP3 1195 aaPredicted RBP16.17■□□□□ 0.18
SNX1-209ENST00000559961 AIDAQ96BJ3 306 aa16.17■□□□□ 0.18
SNX1-209ENST00000559961 MRS2Q9HD23 443 aa16.17■□□□□ 0.18
SNX1-209ENST00000559961 CCDC152Q4G0S7 254 aa16.16■□□□□ 0.18
SNX1-209ENST00000559961 CCDC191Q8NCU4 936 aa16.16■□□□□ 0.18
SNX1-209ENST00000559961 ADARB2Q9NS39 739 aaKnown RBP16.16■□□□□ 0.18
SNX1-209ENST00000559961 CWC25Q9NXE8 425 aaPredicted RBP16.16■□□□□ 0.18
SNX1-209ENST00000559961 ABT1Q9ULW3 272 aaKnown RBP16.16■□□□□ 0.18
SNX1-209ENST00000559961 H7C1D1 291 aa16.15■□□□□ 0.18
SNX1-209ENST00000559961 ITGBL1O95965 494 aaPredicted RBP16.15■□□□□ 0.18
SNX1-209ENST00000559961 HSPA1AP0DMV8 641 aaKnown RBP16.15■□□□□ 0.18
SNX1-209ENST00000559961 HSPA1BP0DMV9 641 aaKnown RBP16.15■□□□□ 0.18
SNX1-209ENST00000559961 EPS15P42566 896 aa16.15■□□□□ 0.18
SNX1-209ENST00000559961 RPS8P62241 208 aaKnown RBP16.15■□□□□ 0.18
SNX1-209ENST00000559961 C8orf58Q8NAV2 365 aa16.15■□□□□ 0.18
SNX1-209ENST00000559961 PHAXQ9H814 394 aaKnown RBP16.15■□□□□ 0.18
SNX1-209ENST00000559961 PASKQ96RG2 1323 aa16.15■□□□□ 0.18
SNX1-209ENST00000559961 ZNF316A6NFI3 1004 aaPredicted RBP16.14■□□□□ 0.17
SNX1-209ENST00000559961 SCNN1DP51172 638 aa16.14■□□□□ 0.17
SNX1-209ENST00000559961 CXCL9Q07325 125 aa16.14■□□□□ 0.17
SNX1-209ENST00000559961 CCDC27Q2M243 656 aa16.14■□□□□ 0.17
SNX1-209ENST00000559961 DEFB115Q30KQ5 88 aa16.14■□□□□ 0.17
SNX1-209ENST00000559961 ANKIB1Q9P2G1 1089 aa16.14■□□□□ 0.17
SNX1-209ENST00000559961 SCN4AP35499 1836 aa16.14■□□□□ 0.17
SNX1-209ENST00000559961 RAD17O75943 681 aa16.13■□□□□ 0.17
SNX1-209ENST00000559961 PCCAP05165 728 aaPredicted RBP16.13■□□□□ 0.17
SNX1-209ENST00000559961 GMPSP49915 693 aaPredicted RBP16.13■□□□□ 0.17
SNX1-209ENST00000559961 PAXIP1Q6ZW49 1069 aaPredicted RBP16.13■□□□□ 0.17
SNX1-209ENST00000559961 METTL22Q9BUU2 404 aaPredicted RBP16.13■□□□□ 0.17
SNX1-209ENST00000559961 ZC3H12CQ9C0D7 883 aaKnown RBP16.13■□□□□ 0.17
SNX1-209ENST00000559961 GPRC5DQ9NZD1 345 aa16.13■□□□□ 0.17
SNX1-209ENST00000559961 RIMBP2O15034 1052 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 PDE8AO60658 829 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 KSR2Q6VAB6 950 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 WWC1Q8IX03 1113 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 TNS4Q8IZW8 715 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 CELF1Q92879 486 aaKnown RBP16.12■□□□□ 0.17
SNX1-209ENST00000559961 MAP3K2Q9Y2U5 619 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 CDHR2Q9BYE9 1310 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 CNTNAP1P78357 1384 aa16.12■□□□□ 0.17
SNX1-209ENST00000559961 SNED1Q8TER0 1413 aa16.11■□□□□ 0.17
SNX1-209ENST00000559961 TWISTNBQ3B726 338 aaPredicted RBP16.11■□□□□ 0.17
SNX1-209ENST00000559961 NCBP3Q53F19 620 aaKnown RBP16.11■□□□□ 0.17
SNX1-209ENST00000559961 ANKRD18AQ8IVF6 992 aa16.11■□□□□ 0.17
SNX1-209ENST00000559961 TSR2Q969E8 191 aaKnown RBP16.11■□□□□ 0.17
SNX1-209ENST00000559961 ECE1P42892 770 aa16.1■□□□□ 0.17
SNX1-209ENST00000559961 ZC3H15Q8WU90 426 aaKnown RBP16.1■□□□□ 0.17
SNX1-209ENST00000559961 CDC5LQ99459 802 aaKnown RBP16.1■□□□□ 0.17
SNX1-209ENST00000559961 BEGAINQ9BUH8 593 aa16.1■□□□□ 0.17
SNX1-209ENST00000559961 CNOT7Q9UIV1 285 aaKnown RBP16.1■□□□□ 0.17
SNX1-209ENST00000559961 GGA1Q9UJY5 639 aa16.1■□□□□ 0.17
SNX1-209ENST00000559961 IL16Q14005 1332 aa16.1■□□□□ 0.17
SNX1-209ENST00000559961 PI4KAP2A4QPH2 592 aa16.09■□□□□ 0.17
SNX1-209ENST00000559961 SLC4A2P04920 1241 aa16.09■□□□□ 0.17
SNX1-209ENST00000559961 VEGFBP49765 207 aa16.09■□□□□ 0.17
SNX1-209ENST00000559961 GPSM2P81274 684 aa16.09■□□□□ 0.17
SNX1-209ENST00000559961 COL13A1Q5TAT6 717 aaPredicted RBP16.09■□□□□ 0.17
SNX1-209ENST00000559961 PI4KAP1Q8N8J0 262 aa16.09■□□□□ 0.17
SNX1-209ENST00000559961 UFL1O94874 794 aa16.08■□□□□ 0.16
SNX1-209ENST00000559961 RPS12P25398 132 aaKnown RBP16.08■□□□□ 0.16
SNX1-209ENST00000559961 MAP2K1Q02750 393 aaPredicted RBP16.08■□□□□ 0.16
SNX1-209ENST00000559961 SLC51AQ86UW1 340 aa16.08■□□□□ 0.16
SNX1-209ENST00000559961 TSPYL6Q8N831 410 aa16.08■□□□□ 0.16
SNX1-209ENST00000559961 DPF2Q92785 391 aa16.08■□□□□ 0.16
SNX1-209ENST00000559961 DBNDD1Q9H9R9 158 aa16.08■□□□□ 0.16
SNX1-209ENST00000559961 SALL2Q9Y467 1007 aaPredicted RBP16.08■□□□□ 0.16
SNX1-209ENST00000559961 RASSF10A6NK89 507 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 ECE2O60344 883 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 CTCFP49711 727 aaPredicted RBP16.07■□□□□ 0.16
SNX1-209ENST00000559961 DOK7Q18PE1 504 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 CDC37L1Q7L3B6 337 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 WDR63Q8IWG1 891 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 TBC1D16Q8TBP0 767 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 CCDC85AQ96PX6 553 aaPredicted RBP16.07■□□□□ 0.16
SNX1-209ENST00000559961 MYH16Q9H6N6 1097 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 POLLQ9UGP5 575 aa16.07■□□□□ 0.16
SNX1-209ENST00000559961 GRM1Q13255 1194 aa16.06■□□□□ 0.16
SNX1-209ENST00000559961 FKBP5Q13451 457 aaPredicted RBP16.06■□□□□ 0.16
SNX1-209ENST00000559961 CCDC184Q52MB2 194 aa16.06■□□□□ 0.16
SNX1-209ENST00000559961 MICALL2Q8IY33 904 aa16.06■□□□□ 0.16
SNX1-209ENST00000559961 JARID2Q92833 1246 aaPredicted RBP16.06■□□□□ 0.16
SNX1-209ENST00000559961 SEC31BQ9NQW1 1179 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms