RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 LDHDQ86WU2 507 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 CNKSR1Q969H4 720 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 RNF166Q96A37 237 aaPredicted RBP7.91□□□□□ -1.14
VPS33B-207ENST00000557470 PRDM10Q9NQV6 1147 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 HEG1Q9ULI3 1381 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 ZNF541Q9H0D2 1346 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 IQCA1LA6NCM1 817 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 NPHP1O15259 732 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 EVI5O60447 810 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 A1BGP04217 495 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 IL6STP40189 918 aaPredicted RBP7.9□□□□□ -1.14
VPS33B-207ENST00000557470 CTCFP49711 727 aaPredicted RBP7.9□□□□□ -1.14
VPS33B-207ENST00000557470 ST5P78524 1137 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 SOGA3Q5TF21 947 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 ZNF454Q8N9F8 522 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 IL17REQ8NFR9 667 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 C7orf43Q8WVR3 580 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 MASTLQ96GX5 879 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 SETDB2Q96T68 719 aa7.9□□□□□ -1.14
VPS33B-207ENST00000557470 TAF1DQ9H5J8 278 aaPredicted RBP7.9□□□□□ -1.14
VPS33B-207ENST00000557470 TMEM88BA6NKF7 163 aa7.89□□□□□ -1.15
VPS33B-207ENST00000557470 DIAPH1O60610 1272 aaKnown RBP7.89□□□□□ -1.15
VPS33B-207ENST00000557470 ITGBL1O95965 494 aaPredicted RBP7.89□□□□□ -1.15
VPS33B-207ENST00000557470 MAP3K9P80192 1104 aa7.89□□□□□ -1.15
VPS33B-207ENST00000557470 TEFQ10587 303 aa7.89□□□□□ -1.15
VPS33B-207ENST00000557470 AIDAQ96BJ3 306 aa7.89□□□□□ -1.15
VPS33B-207ENST00000557470 TEX13AQ9BXU3 409 aaPredicted RBP7.89□□□□□ -1.15
VPS33B-207ENST00000557470 CACNA1SQ13698 1873 aa7.89□□□□□ -1.15
VPS33B-207ENST00000557470 SIPA1L3O60292 1781 aaPredicted RBP7.89□□□□□ -1.15
VPS33B-207ENST00000557470 BCORQ6W2J9 1755 aa7.89□□□□□ -1.15
VPS33B-207ENST00000557470 ARFGEF2Q9Y6D5 1785 aa7.89□□□□□ -1.15
VPS33B-207ENST00000557470 COL3A1P02461 1466 aaPredicted RBP7.88□□□□□ -1.15
VPS33B-207ENST00000557470 CLSPNQ9HAW4 1339 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 SCN4AP35499 1836 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 GNAT3A8MTJ3 354 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 KCNQ3O43525 872 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 PIP4K2AP48426 406 aaPredicted RBP7.88□□□□□ -1.15
VPS33B-207ENST00000557470 LBX1P52954 281 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 CCDC93Q567U6 631 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 EAPPQ56P03 285 aaPredicted RBP7.88□□□□□ -1.15
VPS33B-207ENST00000557470 OLFM4Q6UX06 510 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 NBPF5PQ86XG9 351 aaPredicted RBP7.88□□□□□ -1.15
VPS33B-207ENST00000557470 DZIP3Q86Y13 1208 aaKnown RBP7.88□□□□□ -1.15
VPS33B-207ENST00000557470 FMNL2Q96PY5 1086 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 KCNK17Q96T54 332 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 ZNF277Q9NRM2 450 aaPredicted RBP7.88□□□□□ -1.15
VPS33B-207ENST00000557470 WBP1LQ9NX94 342 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 HACL1Q9UJ83 578 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 ADAMTSL1Q8N6G6 1762 aa7.88□□□□□ -1.15
VPS33B-207ENST00000557470 CEMIPQ8WUJ3 1361 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 RNF123Q5XPI4 1314 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 NPR1P16066 1061 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 EPHX2P34913 555 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 FOSBP53539 338 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 FKBP4Q02790 459 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS33B-207ENST00000557470 CC2D1BQ5T0F9 858 aaKnown RBP7.87□□□□□ -1.15
VPS33B-207ENST00000557470 MAP1SQ66K74 1059 aaPredicted RBP7.87□□□□□ -1.15
VPS33B-207ENST00000557470 ADGRD1Q6QNK2 874 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 GAS2L2Q8NHY3 880 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 USP16Q9Y5T5 823 aa7.87□□□□□ -1.15
VPS33B-207ENST00000557470 KIF7Q2M1P5 1343 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 PRAMEF22A3QJZ6 481 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 KLRG2A4D1S0 409 aaPredicted RBP7.86□□□□□ -1.15
VPS33B-207ENST00000557470 RASSF10A6NK89 507 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 BTBD11A6QL63 1104 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 U2SURPO15042 1029 aaKnown RBP7.86□□□□□ -1.15
VPS33B-207ENST00000557470 PER1O15534 1290 aaPredicted RBP7.86□□□□□ -1.15
VPS33B-207ENST00000557470 HSPA8P11142 646 aaKnown RBP7.86□□□□□ -1.15
VPS33B-207ENST00000557470 CAMK2BQ13554 666 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 CLEC4GQ6UXB4 293 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 CNTROBQ8N137 903 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 ABHD8Q96I13 439 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 ARID3AQ99856 593 aa7.86□□□□□ -1.15
VPS33B-207ENST00000557470 FZD9O00144 591 aa7.85□□□□□ -1.15
VPS33B-207ENST00000557470 DEFB115Q30KQ5 88 aa7.85□□□□□ -1.15
VPS33B-207ENST00000557470 FAM161AQ3B820 660 aa7.85□□□□□ -1.15
VPS33B-207ENST00000557470 PNMA8AQ86V59 439 aaPredicted RBP7.85□□□□□ -1.15
VPS33B-207ENST00000557470 RTKN2Q8IZC4 609 aa7.85□□□□□ -1.15
VPS33B-207ENST00000557470 PHACTR3Q96KR7 559 aa7.85□□□□□ -1.15
VPS33B-207ENST00000557470 PCGF6Q9BYE7 350 aa7.85□□□□□ -1.15
VPS33B-207ENST00000557470 ABT1Q9ULW3 272 aaKnown RBP7.85□□□□□ -1.15
VPS33B-207ENST00000557470 NIP7Q9Y221 180 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS33B-207ENST00000557470 ZNF652Q9Y2D9 606 aa7.85□□□□□ -1.15
VPS33B-207ENST00000557470 WDR33Q9C0J8 1336 aaKnown RBP7.84□□□□□ -1.15
VPS33B-207ENST00000557470 COL4A5P29400 1685 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 FAM177BA6PVY3 158 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 NBPF26B4DH59 902 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 IARSP41252 1262 aaKnown RBP7.84□□□□□ -1.15
VPS33B-207ENST00000557470 MAP2K1Q02750 393 aaPredicted RBP7.84□□□□□ -1.15
VPS33B-207ENST00000557470 NBPF10Q6P3W6 841 aaKnown RBP7.84□□□□□ -1.15
VPS33B-207ENST00000557470 TPTE2Q6XPS3 522 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 GPC2Q8N158 579 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 SYNE4Q8N205 404 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 NBPF15Q8N660 670 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 SNED1Q8TER0 1413 aa7.84□□□□□ -1.15
VPS33B-207ENST00000557470 THSD7BQ9C0I4 1608 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 DPYSL4O14531 572 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 HRO43593 1189 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 SNRPA1P09661 255 aaKnown RBP7.83□□□□□ -1.16
VPS33B-207ENST00000557470 PRKAR2BP31323 418 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms