RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 CCDC152Q4G0S7 254 aa16.49■□□□□ 0.23
PRPF40B-210ENST00000549547 ZNF784Q8NCA9 323 aaPredicted RBP16.49■□□□□ 0.23
PRPF40B-210ENST00000549547 GRAPLQ8TC17 118 aaPredicted RBP16.49■□□□□ 0.23
PRPF40B-210ENST00000549547 FKBP4Q02790 459 aaKnown RBP eCLIP16.48■□□□□ 0.23
PRPF40B-210ENST00000549547 BEND3Q5T5X7 828 aa16.48■□□□□ 0.23
PRPF40B-210ENST00000549547 H7C1W4 665 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 ALDH1L1O75891 902 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 BRPF1P55201 1214 aaPredicted RBP16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 SLC4A10Q6U841 1118 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 UBE3BQ7Z3V4 1068 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 BCL2L13Q9BXK5 485 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 SRCIN1Q9C0H9 1055 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 ATP6V0A2Q9Y487 856 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 LRRC37AA6NMS7 1700 aa16.47■□□□□ 0.23
PRPF40B-210ENST00000549547 KIF16BQ96L93 1317 aa16.46■□□□□ 0.23
PRPF40B-210ENST00000549547 TAF1P21675 1872 aa16.46■□□□□ 0.23
PRPF40B-210ENST00000549547 SP8Q8IXZ3 490 aa16.46■□□□□ 0.23
PRPF40B-210ENST00000549547 PSMD1Q99460 953 aa16.46■□□□□ 0.23
PRPF40B-210ENST00000549547 RARSP54136 660 aaKnown RBP16.45■□□□□ 0.22
PRPF40B-210ENST00000549547 CTSWP56202 376 aa16.45■□□□□ 0.22
PRPF40B-210ENST00000549547 JARID2Q92833 1246 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-210ENST00000549547 PLA2G12BQ9BX93 195 aa16.45■□□□□ 0.22
PRPF40B-210ENST00000549547 C9orf78Q9NZ63 289 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-210ENST00000549547 SNED1Q8TER0 1413 aa16.45■□□□□ 0.22
PRPF40B-210ENST00000549547 RTL9Q8NET4 1388 aa16.44■□□□□ 0.22
PRPF40B-210ENST00000549547 GRM8O00222 908 aa16.44■□□□□ 0.22
PRPF40B-210ENST00000549547 SUPT20HQ8NEM7 779 aa16.44■□□□□ 0.22
PRPF40B-210ENST00000549547 API5Q9BZZ5 524 aaKnown RBP16.44■□□□□ 0.22
PRPF40B-210ENST00000549547 GPBP1L1Q9HC44 474 aaPredicted RBP16.44■□□□□ 0.22
PRPF40B-210ENST00000549547 KDM2BQ8NHM5 1336 aa16.44■□□□□ 0.22
PRPF40B-210ENST00000549547 RPS8P62241 208 aaKnown RBP16.43■□□□□ 0.22
PRPF40B-210ENST00000549547 OLFM4Q6UX06 510 aa16.43■□□□□ 0.22
PRPF40B-210ENST00000549547 CDC5LQ99459 802 aaKnown RBP16.43■□□□□ 0.22
PRPF40B-210ENST00000549547 PRELPP51888 382 aa16.42■□□□□ 0.22
PRPF40B-210ENST00000549547 CASP7P55210 303 aa16.42■□□□□ 0.22
PRPF40B-210ENST00000549547 DPP8Q6V1X1 898 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-210ENST00000549547 MPNDQ8N594 471 aa16.42■□□□□ 0.22
PRPF40B-210ENST00000549547 TTLL11Q8NHH1 800 aa16.42■□□□□ 0.22
PRPF40B-210ENST00000549547 CELF1Q92879 486 aaKnown RBP16.42■□□□□ 0.22
PRPF40B-210ENST00000549547 VPS33BQ9H267 617 aa16.42■□□□□ 0.22
PRPF40B-210ENST00000549547 IPO8O15397 1037 aaKnown RBP16.41■□□□□ 0.22
PRPF40B-210ENST00000549547 IARSP41252 1262 aaKnown RBP16.41■□□□□ 0.22
PRPF40B-210ENST00000549547 CCT4P50991 539 aaKnown RBP16.41■□□□□ 0.22
PRPF40B-210ENST00000549547 ANKRD18AQ8IVF6 992 aa16.41■□□□□ 0.22
PRPF40B-210ENST00000549547 ARHGAP45Q92619 1136 aa16.41■□□□□ 0.22
PRPF40B-210ENST00000549547 ZNF277Q9NRM2 450 aaPredicted RBP16.41■□□□□ 0.22
PRPF40B-210ENST00000549547 NOB1Q9ULX3 412 aaKnown RBP16.41■□□□□ 0.22
PRPF40B-210ENST00000549547 SPEF2Q9C093 1822 aa16.4■□□□□ 0.22
PRPF40B-210ENST00000549547 DPY19L2Q6NUT2 758 aa16.4■□□□□ 0.22
PRPF40B-210ENST00000549547 ZNF526Q8TF50 670 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-210ENST00000549547 JDP2Q8WYK2 163 aa16.4■□□□□ 0.22
PRPF40B-210ENST00000549547 CCDC85AQ96PX6 553 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-210ENST00000549547 RTFDC1Q9BY42 306 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-210ENST00000549547 SEC31BQ9NQW1 1179 aa16.4■□□□□ 0.22
PRPF40B-210ENST00000549547 CSF1RP07333 972 aa16.39■□□□□ 0.21
PRPF40B-210ENST00000549547 GREM2Q9H772 168 aa16.39■□□□□ 0.21
PRPF40B-210ENST00000549547 UTYO14607 1347 aa16.39■□□□□ 0.21
PRPF40B-210ENST00000549547 GLTPD2A6NH11 291 aa16.38■□□□□ 0.21
PRPF40B-210ENST00000549547 IGHMBP2P38935 993 aaKnown RBP16.38■□□□□ 0.21
PRPF40B-210ENST00000549547 COL4A1P02462 1669 aa16.37■□□□□ 0.21
PRPF40B-210ENST00000549547 LTBP1Q14766 1721 aa16.37■□□□□ 0.21
PRPF40B-210ENST00000549547 LARGE2Q8N3Y3 721 aa16.37■□□□□ 0.21
PRPF40B-210ENST00000549547 NSFL1CQ9UNZ2 370 aaKnown RBP16.37■□□□□ 0.21
PRPF40B-210ENST00000549547 HDAC5Q9UQL6 1122 aa16.37■□□□□ 0.21
PRPF40B-210ENST00000549547 DUOX1Q9NRD9 1551 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 ANKRD18BA2A2Z9 1011 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 PPIP5K2O43314 1243 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 ITGA6P23229 1130 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 FOXO4P98177 505 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 FAM161AQ3B820 660 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 NIM1KQ8IY84 436 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 EYA3Q99504 573 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 BSDC1Q9NW68 430 aaPredicted RBP16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 CHMP3Q9Y3E7 222 aa16.36■□□□□ 0.21
PRPF40B-210ENST00000549547 BCAR3O75815 825 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 NBPF7P0C2Y1 421 aaPredicted RBP16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 IFIT5Q13325 482 aaKnown RBP16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 CCDC57Q2TAC2 916 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 LMBR1LQ6UX01 489 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 FRAT1Q92837 279 aaPredicted RBP16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 MPHOSPH8Q99549 860 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 PODXL2Q9NZ53 605 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 ANKIB1Q9P2G1 1089 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 WDR90Q96KV7 1748 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 XDHP47989 1333 aa16.35■□□□□ 0.21
PRPF40B-210ENST00000549547 C6orf229H3BNL8 230 aa16.34■□□□□ 0.21
PRPF40B-210ENST00000549547 EIF6P56537 245 aaKnown RBP16.34■□□□□ 0.21
PRPF40B-210ENST00000549547 GPSM2P81274 684 aa16.34■□□□□ 0.21
PRPF40B-210ENST00000549547 KIAA2012Q0VF49 1180 aa16.34■□□□□ 0.21
PRPF40B-210ENST00000549547 ZKSCAN2Q63HK3 967 aa16.34■□□□□ 0.21
PRPF40B-210ENST00000549547 ATF7IPQ6VMQ6 1270 aa16.34■□□□□ 0.21
PRPF40B-210ENST00000549547 SLC51AQ86UW1 340 aa16.34■□□□□ 0.21
PRPF40B-210ENST00000549547 FZD9O00144 591 aa16.33■□□□□ 0.2
PRPF40B-210ENST00000549547 AOC3Q16853 763 aa16.33■□□□□ 0.2
PRPF40B-210ENST00000549547 WASHC4Q2M389 1173 aa16.33■□□□□ 0.2
PRPF40B-210ENST00000549547 TAF7LQ5H9L4 462 aa16.33■□□□□ 0.2
PRPF40B-210ENST00000549547 TBC1D16Q8TBP0 767 aa16.33■□□□□ 0.2
PRPF40B-210ENST00000549547 SUCLG2Q96I99 432 aa16.33■□□□□ 0.2
PRPF40B-210ENST00000549547 USP44Q9H0E7 712 aa16.33■□□□□ 0.2
PRPF40B-210ENST00000549547 GGA1Q9UJY5 639 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms