RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 NEURL1BA8MQ27 555 aa20.37■□□□□ 0.85
CHMP1A-204ENST00000547687 RTL5Q5HYW3 569 aaPredicted RBP20.37■□□□□ 0.85
CHMP1A-204ENST00000547687 PRR5LQ6MZQ0 368 aa20.37■□□□□ 0.85
CHMP1A-204ENST00000547687 ZBTB3Q9H5J0 574 aa20.37■□□□□ 0.85
CHMP1A-204ENST00000547687 DLEC1Q9Y238 1755 aa20.37■□□□□ 0.85
CHMP1A-204ENST00000547687 NPHP1O15259 732 aa20.37■□□□□ 0.85
CHMP1A-204ENST00000547687 SMARCA5O60264 1052 aaPredicted RBP20.37■□□□□ 0.85
CHMP1A-204ENST00000547687 GRM8O00222 908 aa20.36■□□□□ 0.85
CHMP1A-204ENST00000547687 ZNF784Q8NCA9 323 aaPredicted RBP20.36■□□□□ 0.85
CHMP1A-204ENST00000547687 PIM2Q9P1W9 311 aa20.36■□□□□ 0.85
CHMP1A-204ENST00000547687 NIP7Q9Y221 180 aaKnown RBP eCLIP20.36■□□□□ 0.85
CHMP1A-204ENST00000547687 GSPT1P15170 499 aaKnown RBP20.36■□□□□ 0.85
CHMP1A-204ENST00000547687 TTC22Q5TAA0 569 aa20.36■□□□□ 0.85
CHMP1A-204ENST00000547687 GCKRQ14397 625 aa20.35■□□□□ 0.85
CHMP1A-204ENST00000547687 TBC1D9Q6ZT07 1266 aa20.35■□□□□ 0.85
CHMP1A-204ENST00000547687 CNBD1Q8NA66 436 aa20.35■□□□□ 0.85
CHMP1A-204ENST00000547687 ZNF652Q9Y2D9 606 aa20.35■□□□□ 0.85
CHMP1A-204ENST00000547687 UTYO14607 1347 aa20.35■□□□□ 0.85
CHMP1A-204ENST00000547687 ATP5J2-PTCD1G3V325 749 aa20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 CLEC4GQ6UXB4 293 aa20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 PPP1R42Q7Z4L9 355 aa20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 C2CD5Q86YS7 1000 aa20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 OTUD7AQ8TE49 926 aaPredicted RBP20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 CDC45O75419 566 aa20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 ARHGAP27Q6ZUM4 889 aa20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 NBPF5PQ86XG9 351 aaPredicted RBP20.34■□□□□ 0.85
CHMP1A-204ENST00000547687 MAP3K15Q6ZN16 1313 aa20.33■□□□□ 0.85
CHMP1A-204ENST00000547687 GPTP24298 496 aa20.33■□□□□ 0.85
CHMP1A-204ENST00000547687 RBM25P49756 843 aaKnown RBP20.33■□□□□ 0.85
CHMP1A-204ENST00000547687 DALRD3Q5D0E6 543 aaKnown RBP20.33■□□□□ 0.85
CHMP1A-204ENST00000547687 KIF6Q6ZMV9 814 aa20.33■□□□□ 0.85
CHMP1A-204ENST00000547687 TBC1D2Q9BYX2 928 aa20.33■□□□□ 0.85
CHMP1A-204ENST00000547687 SSH3Q8TE77 659 aa20.32■□□□□ 0.84
CHMP1A-204ENST00000547687 EXOC6BQ9Y2D4 811 aa20.32■□□□□ 0.84
CHMP1A-204ENST00000547687 IBTKQ9P2D0 1353 aaPredicted RBP20.32■□□□□ 0.84
CHMP1A-204ENST00000547687 SUCLG2Q96I99 432 aa20.32■□□□□ 0.84
CHMP1A-204ENST00000547687 SRGAP3O43295 1099 aa20.31■□□□□ 0.84
CHMP1A-204ENST00000547687 HDAC5Q9UQL6 1122 aa20.31■□□□□ 0.84
CHMP1A-204ENST00000547687 H0YIN7 160 aa20.31■□□□□ 0.84
CHMP1A-204ENST00000547687 POLA2Q14181 598 aa20.31■□□□□ 0.84
CHMP1A-204ENST00000547687 ZNF622Q969S3 477 aaKnown RBP eCLIP20.31■□□□□ 0.84
CHMP1A-204ENST00000547687 KAZALD1Q96I82 304 aa20.31■□□□□ 0.84
CHMP1A-204ENST00000547687 ST5P78524 1137 aa20.3■□□□□ 0.84
CHMP1A-204ENST00000547687 BRIP1Q9BX63 1249 aa20.3■□□□□ 0.84
CHMP1A-204ENST00000547687 ZNF219Q9P2Y4 722 aaPredicted RBP20.3■□□□□ 0.84
CHMP1A-204ENST00000547687 CCDC88AQ3V6T2 1871 aa20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 EIF5BO60841 1220 aaKnown RBP20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 NUTM1Q86Y26 1132 aa20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 JARID2Q92833 1246 aaPredicted RBP20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 LRRCC1Q9C099 1032 aa20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 TNRC6CQ9HCJ0 1690 aaKnown RBP20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 SLX4Q8IY92 1834 aa20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 ERVV-1B6SEH8 477 aa20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 MTX1Q13505 466 aa20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 SBF1O95248 1867 aa20.29■□□□□ 0.84
CHMP1A-204ENST00000547687 UBN2Q6ZU65 1347 aa20.28■□□□□ 0.84
CHMP1A-204ENST00000547687 ZNF526Q8TF50 670 aaPredicted RBP20.28■□□□□ 0.84
CHMP1A-204ENST00000547687 BICC1Q9H694 974 aaKnown RBP20.28■□□□□ 0.84
CHMP1A-204ENST00000547687 ANKRD36CQ5JPF3 1778 aa20.28■□□□□ 0.84
CHMP1A-204ENST00000547687 PDE6BP35913 854 aa20.27■□□□□ 0.84
CHMP1A-204ENST00000547687 UBE3BQ7Z3V4 1068 aa20.27■□□□□ 0.84
CHMP1A-204ENST00000547687 OSBPL3Q9H4L5 887 aa20.27■□□□□ 0.84
CHMP1A-204ENST00000547687 SDSP20132 328 aa20.27■□□□□ 0.84
CHMP1A-204ENST00000547687 NFKBIBQ15653 356 aa20.27■□□□□ 0.84
CHMP1A-204ENST00000547687 TTLL6Q8N841 843 aa20.27■□□□□ 0.84
CHMP1A-204ENST00000547687 SURF6O75683 361 aaKnown RBP20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 GTF2E1P29083 439 aaPredicted RBP20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 PDE1AP54750 535 aa20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 TPTE2Q6XPS3 522 aa20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 GIGYF2Q6Y7W6 1299 aaKnown RBP20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 TCIRG1Q13488 830 aa20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 SUSD4Q5VX71 490 aa20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 CWC25Q9NXE8 425 aaPredicted RBP20.26■□□□□ 0.83
CHMP1A-204ENST00000547687 ABCC12Q96J65 1359 aa20.25■□□□□ 0.83
CHMP1A-204ENST00000547687 ERFEQ4G0M1 354 aa20.25■□□□□ 0.83
CHMP1A-204ENST00000547687 EPHA10Q5JZY3 1008 aa20.25■□□□□ 0.83
CHMP1A-204ENST00000547687 CASP7P55210 303 aa20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 RASSF7Q02833 373 aa20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 CCDC191Q8NCU4 936 aa20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 H7C1W4 665 aa20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 SRGNP10124 158 aa20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 ZNF34Q8IZ26 560 aa20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 ISCA1Q9BUE6 129 aa20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 SLKQ9H2G2 1235 aaPredicted RBP20.24■□□□□ 0.83
CHMP1A-204ENST00000547687 CASC1Q6TDU7 716 aa20.23■□□□□ 0.83
CHMP1A-204ENST00000547687 SALL3Q9BXA9 1300 aa20.22■□□□□ 0.83
CHMP1A-204ENST00000547687 RGL2O15211 777 aa20.22■□□□□ 0.83
CHMP1A-204ENST00000547687 C21orf2O43822 256 aa20.22■□□□□ 0.83
CHMP1A-204ENST00000547687 RAB11FIP3O75154 756 aa20.22■□□□□ 0.83
CHMP1A-204ENST00000547687 HSCBQ8IWL3 235 aa20.22■□□□□ 0.83
CHMP1A-204ENST00000547687 ANTXR1Q9H6X2 564 aa20.22■□□□□ 0.83
CHMP1A-204ENST00000547687 C9orf131Q5VYM1 1079 aa20.21■□□□□ 0.83
CHMP1A-204ENST00000547687 SNX21Q969T3 373 aa20.21■□□□□ 0.83
CHMP1A-204ENST00000547687 KIF2CQ99661 725 aa20.21■□□□□ 0.83
CHMP1A-204ENST00000547687 PA2G4Q9UQ80 394 aaKnown RBP20.21■□□□□ 0.83
CHMP1A-204ENST00000547687 NTSR2O95665 410 aa20.2■□□□□ 0.83
CHMP1A-204ENST00000547687 MX1P20591 662 aa20.2■□□□□ 0.83
CHMP1A-204ENST00000547687 TRIM28Q13263 835 aaKnown RBP20.2■□□□□ 0.83
CHMP1A-204ENST00000547687 PRPF40BQ6NWY9 871 aaKnown RBP20.2■□□□□ 0.82
CHMP1A-204ENST00000547687 SYNE4Q8N205 404 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms